View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18965_low_22 (Length: 219)
Name: NF18965_low_22
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 27505531 - 27505720
Alignment:
| Q |
12 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27505531 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatcttttgaatgtgagaaactaaactgctacaaaaatgggtcaaatatctaca |
27505630 |
T |
|
| Q |
112 |
tcagtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27505631 |
ttagtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
27505720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 27480213 - 27480023
Alignment:
| Q |
12 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaa-tgggtcaaatatctac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
27480213 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatattttgaacgtgagaaactaaactactacaaaaaatggatcaaataactac |
27480114 |
T |
|
| Q |
111 |
atcagtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
27480113 |
gtcagtcctatgatatcttcaaaaaggtaattcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagacc |
27480023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 27523231 - 27523421
Alignment:
| Q |
12 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctaca |
111 |
Q |
| |
|
|||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
27523231 |
tgaggtgaacatatttacaagcaaatatgataacaacaaaagataaaatcttttgaaggtgagaaactaaactgctacaaaactgggtcaaatatctatg |
27523330 |
T |
|
| Q |
112 |
tca-gtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
27523331 |
tcatgtcctatgatatcttcaaagagctaattcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagacc |
27523421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 27487297 - 27487105
Alignment:
| Q |
12 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactac-aaaaatgggtcaaatatctac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || ||||| |||| |||||||||||| |||||||| |
|
|
| T |
27487297 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatcttttgaaggtgag-aataaaactgctacaaaaaatgggtcagatatctac |
27487199 |
T |
|
| Q |
111 |
atcagtccaatgatatcttcaaagagc---taattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
27487198 |
gtcagtcctatgatatcttcaaagaactaataattcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagacc |
27487105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 27469739 - 27469582
Alignment:
| Q |
44 |
acaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctacatcagtccaatgatatcttcaaagagctaattc |
143 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||| | |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
27469739 |
acaacaaaagtgaaaatcttttgaaggtatgaaactaaagtgctacaaaaatgggtcagatatctacgtcagtcctatgatatcttcaaagagctaattc |
27469640 |
T |
|
| Q |
144 |
aattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
27469639 |
aattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagacc |
27469582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 27502011 - 27502153
Alignment:
| Q |
60 |
tcttttgaatgtgagaaactaaactactacaaaaa-tgggtcaaatatctacatcagtccaatgatatcttcaaagagctaattcaattcaagtgagaaa |
158 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27502011 |
tcttttgaaggtgagaaactaaactgctacaaaaaatgtgtcaaatatctacgtcagtcctatgatatcttcaaagagctaattcaatttaagtgagagg |
27502110 |
T |
|
| Q |
159 |
tgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
27502111 |
tgatatctaagaaaatgtcttctctgcaaggaatagttagacc |
27502153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 27460783 - 27460600
Alignment:
| Q |
12 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctaca |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| || |||| |||| | |||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
27460783 |
tgagatgaacatttttacaac----tatgataacaacaaaagattaa-tcttctgaaggatagaaactaaactgctacaaaa-tgggtcaaataactacg |
27460690 |
T |
|
| Q |
112 |
tcagtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||||||| ||||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
27460689 |
tcagtcctatgatatcttcaaagagctaattcaaattaagtgagaggtgatatccaagaaaatgtcttctctgcaaggaatggtgagacc |
27460600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 27525942 - 27526130
Alignment:
| Q |
12 |
tgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctaca |
111 |
Q |
| |
|
|||| ||||| |||| | || ||||||| |||||||||||||||||| |||| | || ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27525942 |
tgaggtgaactttttcataaacaagtatcataacaacaaaagataaa-tcttctaaaggtgagaaactaaactgctacaaaaatgggtcaaatatctacg |
27526040 |
T |
|
| Q |
112 |
tcagtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||| || ||| ||||||| ||||| |||||||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27526041 |
tcaatcttatggtatcttccgagagccaattcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagacc |
27526130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 27513641 - 27513794
Alignment:
| Q |
48 |
caaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctacatcagtccaatgatatcttcaaagagctaattcaatt |
147 |
Q |
| |
|
||||||| ||| |||||| || ||||||||||| |||||||||||| |||||||||||||||| ||| | | ||| || ||||||||| | |||||||| |
|
|
| T |
27513641 |
caaaagagaaactcttttcaaggtgagaaactatactactacaaaattgggtcaaatatctacgtcaatactatgctaacttcaaagatttgattcaatt |
27513740 |
T |
|
| Q |
148 |
caagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
|||| ||||| ||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
27513741 |
caagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagacc |
27513794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 27476920 - 27476809
Alignment:
| Q |
90 |
aaaaatgggtcaaatatctacatcagtccaatgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaagg |
189 |
Q |
| |
|
||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| | ||||| |||||||| |||||||||||||| |
|
|
| T |
27476920 |
aaaaatgagtaaaatatctacgtcagtcctatgatatcttcaaagagctaattcaatttaagtgagaggtaatatccaagaaaatgtcttctctgcaagg |
27476821 |
T |
|
| Q |
190 |
aatagtgagacc |
201 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
27476820 |
aatagttagacc |
27476809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 27474178 - 27474070
Alignment:
| Q |
24 |
ttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctacatcagtccaatga |
123 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| || |||||||||| | |||||||||| ||||||||||||| |||||| ||| |
|
|
| T |
27474178 |
ttttacatccaagtatgataacaacaaaagtgaaaatcttttgaaggttagaaactaaagtgctacaaaaattggtcaaatatctatgtcagtcttttga |
27474079 |
T |
|
| Q |
124 |
tatcttcaa |
132 |
Q |
| |
|
||||||||| |
|
|
| T |
27474078 |
tatcttcaa |
27474070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 27467118 - 27466943
Alignment:
| Q |
24 |
ttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatctacatcagtccaatga |
123 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| |||||| || ||||||||| | ||||||||| | ||| ||||||| ||| || | | |
|
|
| T |
27467118 |
ttttacatccaagtatgataacaacaaaagtggaaatcgtttgaaggttagaaactaatttcatacaaaaattgatcagatatctatgtcaatcttctaa |
27467019 |
T |
|
| Q |
124 |
tatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27467018 |
tatcttc--agagctacttcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagacc |
27466943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 27516560 - 27516627
Alignment:
| Q |
134 |
gagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
27516560 |
gagctacttcaattcaagttagaagtgatatctaagaaaacttcttctttgcaaggaatagtgagacc |
27516627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 27498585 - 27498537
Alignment:
| Q |
153 |
gagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||||| ||||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
27498585 |
gagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagacc |
27498537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 27501486 - 27501439
Alignment:
| Q |
154 |
agaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
|||| ||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
27501486 |
agaagtgatatctaagaacatgtcttctctacaaggaatagtgagacc |
27501439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 27557653 - 27557611
Alignment:
| Q |
159 |
tgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
27557653 |
tgatatctaagaaaacatcttctctgcatggaatagtgagacc |
27557611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 27476964 - 27476928
Alignment:
| Q |
12 |
tgagatgaacatttttacaaccaagtatgataacaaca |
49 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27476964 |
tgagatgaacatttttacaa-caagtatgataacaaca |
27476928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 27500295 - 27500352
Alignment:
| Q |
140 |
attcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtga |
197 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
27500295 |
attcaattcaagcaagaagtgaattctaagaaaaggtcttctctgcaaggaatagtga |
27500352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 27444772 - 27444812
Alignment:
| Q |
161 |
atatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
27444772 |
atatctaagaaaacgtcttctctgcaaggaattgtgagacc |
27444812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 1759454 - 1759374
Alignment:
| Q |
121 |
tgatatcttcaaagagctaattcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagacc |
201 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
1759454 |
tgatattttcagagagctgattcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagacc |
1759374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University