View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_3 (Length: 406)
Name: NF18965_low_3
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 45461889 - 45461515
Alignment:
| Q |
17 |
agaaatagttatagttatatagtacatatcataccaacttctacaagagcagcatgagggattttgagagcaaccggaggttcacgaccattcttttcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461889 |
agaaatagttatagttatatagtacatatcataccaacttctacaagagcagcatgagggattttgagagcaaccggaggttcacgaccattcttttcaa |
45461790 |
T |
|
| Q |
117 |
agaaacgaaaaaccatgattaagaatctcttgagatagtttgagcaatcacgaaccactaaatgtgactgtcccaagaaataggcactaccactctccct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461789 |
agaaacgaaaaaccatgattaagaatctcttgagatagtttgagccatcacgaaccactaaatgtgactgtcccaagaaataggcactaccactctccct |
45461690 |
T |
|
| Q |
217 |
tgcatcaattagttccaacagctccttcctcacagattctcccattttaggactactactagcaggaggcaacaagaaccgtacnnnnnnnctcatgttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |
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| T |
45461689 |
tgcatcaattagttccaacagctccttcctcacagattctcccattttaggactactactagcaggaggcaacatgaaccgtactttttttcttttgttg |
45461590 |
T |
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| Q |
317 |
caagagctactactcgccaacaacgtatgatcattttcctcaattactgctgggctaatctgagcatcaatagta |
391 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
45461589 |
caagagctactactcgccaacaatgcatgatcattttcctcaattactgctgggctaatctgagcttcattagta |
45461515 |
T |
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