View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_4 (Length: 389)
Name: NF18965_low_4
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 444217 - 443846
Alignment:
| Q |
19 |
tggagcaaataaacaagtcttatagggaaatcggcgaggaagaaaagtgtagggtagaaaggggcaacaagtgtgaggaacatggccctctcagccaggt |
118 |
Q |
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| T |
444217 |
tggagcaaataaacaagtcttatagggaaatcggcgaggaagaaaagtgtagggtaggaaggggcaacaagtgtgaggaacatggccctctcagccaggt |
444118 |
T |
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| Q |
119 |
cttcagcgacagttggatcagaagcaacagttgttaggtcagaatcgatgattccgttgatggaaatgaagttcatggccgcttgttgaaatagttggag |
218 |
Q |
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| T |
444117 |
cttcagcgacagttggatcagaagcaacagttgttaggtcagaatcgatgattccgttgacggaaatgaagttcatggccgcttgttgaaatagttggag |
444018 |
T |
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| Q |
219 |
ggaggaattgaattgagagtgaataagaagaacctccaatatgtagccttttgggtcgcgttcaactttggattggagtgtttgaaggtttagcttctcc |
318 |
Q |
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| T |
444017 |
ggaggaattgaattgagagtgaataaggagaacctccaatatgtagcctattgggtcgcgttcaactttggattggagtgtttgaaggtttagcttctcc |
443918 |
T |
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| Q |
319 |
gacctcccacccaaagcctccgccaccggtagtttgccg-cgcatgacatgaaattggttgagcttagtttc |
389 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
443917 |
gacctcccacccaaagcctccgccaccattagtttgccgtcgcatgacatgaaattggttgagcttagtttc |
443846 |
T |
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