View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_5 (Length: 355)
Name: NF18965_low_5
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 45318649 - 45318978
Alignment:
| Q |
9 |
cgaagaatatgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaa |
108 |
Q |
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| T |
45318649 |
cgaagaagatgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaa |
45318748 |
T |
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| Q |
109 |
gatgatgatgataagaaaacaaatcctactgataaccaggtggagcctgagaaaattgaggctgaatatgatgataagaaagcaaatcctaacgagggaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45318749 |
gatgatgatgataagaaaacaaatcctactgataaccaggtggagcctgagaaaattgaggctgaatatgatgataagaaagcaaatcctaacgagggaa |
45318848 |
T |
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| Q |
209 |
taactatcacaaaaggtccggctaagattctttcacgttatcttcgtgatcgtgcgagttcctgccatgatttatgcaaatatggtattcagcatgccac |
308 |
Q |
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| T |
45318849 |
taactatcacaaaaggtccggctaagattctttcacgttatcttcgtgatcgtgcgagttcctgccatgatttatgcaaatatggtattcagcatgccac |
45318948 |
T |
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| Q |
309 |
tgaaacaaaaccatggattacatcacagaa |
338 |
Q |
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| T |
45318949 |
tgaaacaaaaccatggagtacatcacagaa |
45318978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 45318447 - 45318550
Alignment:
| Q |
17 |
atgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaagatgatga |
116 |
Q |
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| T |
45318447 |
atgatgagaagaaagcaaatcctacagttaaccaggtggagtcggagaaaattactgttaaccaggtagagcctgagaaaattgaggctgaagatgatga |
45318546 |
T |
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| Q |
117 |
tgat |
120 |
Q |
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|||| |
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| T |
45318547 |
tgat |
45318550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 45318563 - 45318709
Alignment:
| Q |
19 |
gatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagactgagaaaattgaggctgaagatgatgatg |
118 |
Q |
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|||| ||||||||||| ||||| |||||| |||||||||||| ||||||| || | ||||| ||||| |||||||||||||||| ||||| ||||||| |
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| T |
45318563 |
gatggtaagaaagcaaatcctacagttaacctggtggagtctgaaaaaattactggtaaccagatagagcctgagaaaattgaggccgaagaagatgatg |
45318662 |
T |
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| Q |
119 |
ataagaaaacaaatcctactgataaccaggtggagcctgagaaaatt |
165 |
Q |
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| T |
45318663 |
ataagaaagcaacgcctactcttaaccaggtggagtctgagaaaatt |
45318709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 45318303 - 45318388
Alignment:
| Q |
65 |
aaattattgttcaccaggtagagactgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtggag |
153 |
Q |
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| T |
45318303 |
aaattattgtttaccaggtggagtctgagaaaattgaggctgaa---gatgatgataagaaaaaaaatcctactataaaccaggtggag |
45318388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 45318348 - 45318499
Alignment:
| Q |
17 |
atgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaattattgttcaccaggtagagac------tgagaaaattgaggctgaaga |
110 |
Q |
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|||||||||||||| || |||||| | ||||||||||||| ||| |||||||| ||| |||||| |||||| ||||||||||||||||||| | |
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| T |
45318348 |
atgatgataagaaaaaaaatcctactataaaccaggtggagtatgaaaaaattatcgttaaccaggcagagacggagcctgagaaaattgaggctgaaaa |
45318447 |
T |
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| Q |
111 |
tgatgatgataagaaaacaaatcctactgataaccaggtggagcctgagaaaatt |
165 |
Q |
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|||||| |||||| |||||||||| | ||||||||||||| | ||||||||| |
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| T |
45318448 |
tgatgag---aagaaagcaaatcctacagttaaccaggtggagtcggagaaaatt |
45318499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 45318421 - 45318470
Alignment:
| Q |
150 |
ggagcctgagaaaattgaggctgaatatgatgataagaaagcaaatccta |
199 |
Q |
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| T |
45318421 |
ggagcctgagaaaattgaggctgaaaatgatgagaagaaagcaaatccta |
45318470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 45318315 - 45318371
Alignment:
| Q |
143 |
accaggtggagcctgagaaaattgaggctgaatatgatgataagaaagcaaatccta |
199 |
Q |
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| T |
45318315 |
accaggtggagtctgagaaaattgaggctgaagatgatgataagaaaaaaaatccta |
45318371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 45318499 - 45318547
Alignment:
| Q |
135 |
tactgataaccaggtggagcctgagaaaattgaggctgaatatgatgat |
183 |
Q |
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| T |
45318499 |
tactgttaaccaggtagagcctgagaaaattgaggctgaagatgatgat |
45318547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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