View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_6 (Length: 339)
Name: NF18965_low_6
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 28932967 - 28932660
Alignment:
| Q |
14 |
tggaatgaacacgccgtctcttaggtggatcactacttagttcctcccttagtatgtcataacctttcttggttatgtccacaatttttgcatcctttaa |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28932967 |
tggaacgaacacgccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtctacaatttttgcatcctttaa |
28932868 |
T |
|
| Q |
114 |
tttttggaaggaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccagatgcaaattcctggtttttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932867 |
tttttggaaggaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccagatgcaaattcctggtttttc |
28932768 |
T |
|
| Q |
214 |
tcttcctcgggtgatgtctgacttccttgctttgcatcagcatccagttttgttgaagaatcagttgatcctgaagagtcctgctttcctatcccaactt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932767 |
tcttcctcgggtgatgtctgacttccttgctttgcatcagcatccagttttgttgaagaatcagttgatcctgaagagtcctgctttcctatcccaactt |
28932668 |
T |
|
| Q |
314 |
tcacctaa |
321 |
Q |
| |
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|||||||| |
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| T |
28932667 |
tcacctaa |
28932660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 10187222 - 10186967
Alignment:
| Q |
24 |
acgccgtctcttaggtggatcactacttagttcctcccttagtatgtcataacctttcttggttatgtccacaatttttgcatcctttaatttttggaag |
123 |
Q |
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|||| |||||||||||| | ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
10187222 |
acgctgtctcttaggtgagttactacttagctcctcctttagtatgtcataacctttcttggtcatgtccacaatttt-gcatcctttaatttttggaag |
10187124 |
T |
|
| Q |
124 |
gaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccagatgcaaattcctggtttttctcttcctcgg |
223 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||| ||| ||||| | | |||||| ||||||||||||||| | |
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| T |
10187123 |
gaagtagaaaccattggtgacgaaaaggttgacttaaatttgccaaacaatgattctgaagcattgccagacggagattcctcgtttttctcttcctcag |
10187024 |
T |
|
| Q |
224 |
gtgatgtctgacttccttgctttgcatcagcatccagttttgttgaagaatcagttg |
280 |
Q |
| |
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||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
10187023 |
gtgatttctgacttccttgctttgcatcagcattctgttttgttgaaaaatcagttg |
10186967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 35121092 - 35121399
Alignment:
| Q |
14 |
tggaatgaacacgccgtctcttaggtggatcactacttagttcctcccttagtatgtcataacctttcttggttatgtccacaatttttgcatcctttaa |
113 |
Q |
| |
|
||||||||||| || |||||||||||| | | ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35121092 |
tggaatgaacaggctgtctcttaggtgtgttgccacttagttcctcctttagtatgtcataacctttcttggtcatgtccacaatttttgcatcctttaa |
35121191 |
T |
|
| Q |
114 |
tttttggaaggaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccagatgcaaattcctggtttttc |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||| ||||| ||| |||||||||||||| |
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| T |
35121192 |
tttttggaaggaagtagaaacttttggtgacgaaaaggttgacttaaattttccaaacaatgactctgaagcattgccagaagcagattcctggtttttc |
35121291 |
T |
|
| Q |
214 |
tcttcctcgggtgatgtctgacttccttgctttgcatcagcatccagttttgttgaagaatcagttgatcctgaagagtcctgctttcctatcccaactt |
313 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
35121292 |
tcttcctcgggtgatgtctgtcttccttgctttgcatccgcatcctgttttgttgaagaatctgttgatcctgaagagtcctgctttcctatcccagctt |
35121391 |
T |
|
| Q |
314 |
tcacctaa |
321 |
Q |
| |
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|||||||| |
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|
| T |
35121392 |
tcacctaa |
35121399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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