View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_7 (Length: 324)
Name: NF18965_low_7
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 443429 - 443724
Alignment:
| Q |
18 |
caaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaat |
115 |
Q |
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| T |
443429 |
caaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttaccagaggaaagtgtggtttgatgaaaaaacagcaaat |
443528 |
T |
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| Q |
116 |
gcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatg |
215 |
Q |
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| T |
443529 |
gcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatg |
443628 |
T |
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| Q |
216 |
tatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatg |
311 |
Q |
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| T |
443629 |
tatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatg |
443724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
44 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
129 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
44 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
126 |
Q |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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