View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18965_low_8 (Length: 322)

Name: NF18965_low_8
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18965_low_8
NF18965_low_8
[»] chr4 (1 HSPs)
chr4 (20-314)||(31548390-31548677)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 31548390 - 31548677
Alignment:
Q  20 aagagcactttgtacaagctgtgaaacttctacaaaaacttcttcttgtgatacgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcct 119  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31548390 aagagcactttgcacaagctgtgaaacttctacaaacacttcttcttgtgatatgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcct 31548489  T
Q  120 aaaaacaaaataggagtcacatgagttgccaatttaataagatcataactaaaacaatcatagaaaaataagaaaaattatactttcaagtttcaaatac 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  31548490 aaaaacaaaataggagtcacacgagttgccaatttaataagatcataactaaaacaatcatagaaaaataagaaaaattatac-------tttcaaatac 31548582  T
Q  220 atcatcataacagatataccattttgggctaggtcaattcctcgtccagaactttccattgataatggataactgaatatcttgccttctgtgct 314  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31548583 atcatcacaacagatataccattttgggctaggtcaattcctcgtccagaagtttccattgatgatggataactgaatatcttgccttctgtgct 31548677  T

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