View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18966_high_3 (Length: 287)
Name: NF18966_high_3
Description: NF18966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18966_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 9166558 - 9166834
Alignment:
| Q |
1 |
aaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166558 |
aaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgaacagtaataaacacagataagaaaataaagagcaaagttatttcc |
9166657 |
T |
|
| Q |
101 |
acgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166658 |
acgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactacttctttcccttcataagcaggtaatatgtagctgattgtgaacc |
9166757 |
T |
|
| Q |
201 |
ttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9166758 |
ttctagatgaccctgaaattgggactgacctgtttcatcttccaagaaccaaggcctgttcttgtacttctcctatg |
9166834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9155141 - 9155415
Alignment:
| Q |
1 |
aaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttcc |
100 |
Q |
| |
|
||||||||||||| | || ||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| ||| |
|
|
| T |
9155141 |
aaagttgtacctacaaaaaagcatgccaaactttgcatcatcctactgtctttgagcagtaacaaacacagataagaaaaggaagataaaacca---tcc |
9155237 |
T |
|
| Q |
101 |
acgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaacc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
9155238 |
actaacacaatccttaacaagcataccaggaaccagcaggaatggcaacaaactccttcttttccttcattagcaggtaatacgtagctgattgtgaacc |
9155337 |
T |
|
| Q |
201 |
ttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatgc |
278 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9155338 |
ttcaagatgaccctgaaactgggactgacctgtttcatcctccaagagccaaggcctgttcttgtacttctcctatgc |
9155415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University