View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18966_low_1 (Length: 510)
Name: NF18966_low_1
Description: NF18966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18966_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 7936772 - 7937228
Alignment:
| Q |
19 |
accacaacaccatcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttc |
118 |
Q |
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| T |
7936772 |
accacaacaccatcatcacaagaagatctatccactagctcctgaaacacagggtgttgaacaacattggagttcacaaggtattgtcgccgcgactttc |
7936871 |
T |
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| Q |
119 |
cgacatagacagcatgaagttctttttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggccatct |
218 |
Q |
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| T |
7936872 |
cgacatagacagcatgaagctcttgttcttgtt------gcttggaggaggaagagatagagctattgttgcggctgagtttggttaatgaaggccatct |
7936965 |
T |
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| Q |
219 |
tttgatagctgacttaaacattgttagttttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagtgaat |
318 |
Q |
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| T |
7936966 |
tttgatagctgacttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaa-------------gtgaat |
7937052 |
T |
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| Q |
319 |
ggtgatgagaaaatgggagggttaaggtttgattataaaggagtgggagtagtagtaaatgatgatgatgttgtgaagtgaagagagaaacacgtgcatg |
418 |
Q |
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| T |
7937053 |
ggtgatgagaaaatgggagggttaaggtttgattataaaggagtgggagtagtagtaaatgatgatgatgttgtgaagtgaagagagaaacacgtgcatg |
7937152 |
T |
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| Q |
419 |
gcccactgtttagtaacagt--acacagctaagaatgatagtatatttttggtggagaaatggaaaattagttgttat |
494 |
Q |
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| T |
7937153 |
gcccactgtttagtaacggtacacacagctaagaatg--agtatatttttggtggagaaatggaaaattagttgttat |
7937228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 7952702 - 7953023
Alignment:
| Q |
15 |
aacaaccacaacaccatcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgac |
114 |
Q |
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| T |
7952702 |
aacaaccacaacaccatcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgac |
7952801 |
T |
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| Q |
115 |
tttccgacatagacagcatgaagttctttttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggcc |
214 |
Q |
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| T |
7952802 |
tttccgacatagacagcatgaagttcttgttcatgttcatgttgcttggttgaggatgagacagagctattgttgcggctgagtttggttaatgaaggcc |
7952901 |
T |
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| Q |
215 |
atcttttgatagctgacttaaacattgttagttttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagt |
314 |
Q |
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| T |
7952902 |
atcttttgatagctgacttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagt |
7953001 |
T |
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| Q |
315 |
gaatggtgatgagaaaatggga |
336 |
Q |
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|||| ||||||||||||||||| |
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| T |
7953002 |
gaattgtgatgagaaaatggga |
7953023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 7953053 - 7953101
Alignment:
| Q |
381 |
tgatgatgttgtgaagtgaagagagaaacacgtgcatggcccactgttt |
429 |
Q |
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| T |
7953053 |
tgatgatgatgtgaagtgaagggcaaaacacgtgcatggcccactgttt |
7953101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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