View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18966_low_5 (Length: 246)
Name: NF18966_low_5
Description: NF18966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18966_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 9166513 - 9166289
Alignment:
| Q |
16 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
115 |
Q |
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| T |
9166513 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
9166414 |
T |
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| Q |
116 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatg |
203 |
Q |
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| T |
9166413 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtaaaaaaactggtgatgatgatgatgaaggtccttcctctgataaaggagaggaagatg |
9166314 |
T |
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| Q |
204 |
aagatgaggaagtagataagaagaa |
228 |
Q |
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| T |
9166313 |
aagatgaggaagtagataagaagaa |
9166289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 9155096 - 9154872
Alignment:
| Q |
16 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
115 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
9155096 |
agagaagatgaaaaataggaaaaaaactgctgatggatatcaaagatggatgatgaaagcagcaaacaatgggcctgctgcatttggtgaacatgggaag |
9154997 |
T |
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| Q |
116 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatg |
203 |
Q |
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| T |
9154996 |
ttagatgacaaggagagcaacgcagggggtgggagaggccgtaaaaagactggtgatgatgaagatgaaggtccttcctctgataaaggagaggaagatg |
9154897 |
T |
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| Q |
204 |
aagatgaggaagtagataagaagaa |
228 |
Q |
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|||| ||||||||||||| |||||| |
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| T |
9154896 |
aagacgaggaagtagataggaagaa |
9154872 |
T |
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