View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18966_low_6 (Length: 219)
Name: NF18966_low_6
Description: NF18966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18966_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 39242600 - 39242503
Alignment:
| Q |
101 |
gtacaataacaaacttatttttcctctnnnnnnn-cttattttatttcatgaataatgtgagcaataaagttggagtcaaatcaaaacttgaaaacta |
197 |
Q |
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| T |
39242600 |
gtacaataacaaacttatttttcctctaaaaaaaacttattttatttcatgaataatgtgagcaataaagttggagtcaaatcaaaacttgaaaacta |
39242503 |
T |
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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 39242685 - 39242647
Alignment:
| Q |
16 |
atgaagtcaatgcaaaattatgtctgtgacttggatcac |
54 |
Q |
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| T |
39242685 |
atgaagtcaatgcaaaattatgtccgtgacttggatcac |
39242647 |
T |
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