View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18967_high_2 (Length: 422)

Name: NF18967_high_2
Description: NF18967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18967_high_2
NF18967_high_2
[»] chr2 (3 HSPs)
chr2 (1-406)||(31480975-31481380)
chr2 (202-252)||(24479593-24479643)
chr2 (118-166)||(7702743-7702791)
[»] chr8 (2 HSPs)
chr8 (178-256)||(5001101-5001179)
chr8 (199-256)||(6223812-6223872)
[»] chr4 (7 HSPs)
chr4 (178-253)||(21318106-21318181)
chr4 (178-235)||(21317880-21317937)
chr4 (178-235)||(21317993-21318050)
chr4 (118-174)||(37750723-37750779)
chr4 (181-247)||(24558665-24558731)
chr4 (118-167)||(21317785-21317834)
chr4 (178-223)||(48465697-48465742)
[»] chr6 (6 HSPs)
chr6 (178-256)||(30129295-30129372)
chr6 (301-369)||(30129229-30129295)
chr6 (309-362)||(1943095-1943148)
chr6 (118-171)||(30129428-30129481)
chr6 (199-251)||(34375266-34375319)
chr6 (200-244)||(1942989-1943033)
[»] chr1 (5 HSPs)
chr1 (178-244)||(28637778-28637844)
chr1 (184-241)||(17113364-17113421)
chr1 (118-174)||(18308460-18308516)
chr1 (118-166)||(39367881-39367929)
chr1 (199-249)||(39367758-39367811)
[»] chr3 (2 HSPs)
chr3 (199-243)||(35083428-35083472)
chr3 (119-171)||(35083276-35083328)
[»] chr5 (4 HSPs)
chr5 (176-255)||(42076473-42076556)
chr5 (120-171)||(10869967-10870018)
chr5 (118-166)||(38449722-38449770)
chr5 (135-174)||(31571344-31571383)
[»] scaffold0002 (1 HSPs)
scaffold0002 (182-253)||(445912-445983)
[»] chr7 (2 HSPs)
chr7 (299-372)||(8248550-8248623)
chr7 (123-174)||(26608297-26608348)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 31480975 - 31481380
Alignment:
Q  1 tgaaaaaatgtcgcttgtttttagtttttaagttataaaatgtgtcccaaagttgtttagtctnnnnnnnttgtgaatttatcaaaagatgttattgatt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||| |||||    
T  31480975 tgaaaaaatgtcgcatgtttttagtttttaagttataaaatgtgtcccaaagttgtttagtctaaaaaaattgtgaatctatcaaaagatgttactgatt 31481074  T
Q  101 gaagtagattnnnnnnngtggattatttataggattttttgtagtcaatccaccacattgaatctaaaaattactttaacaattttgaataacaagataa 200  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31481075 gaagtagattaaaaaaagtggattatttataggattttttgtagtcaatccaccacattgaatctaaaaattacttcaacaattttgaataacaagataa 31481174  T
Q  201 tgaaataagatatcctaactaaacttactaatcactttttccaccaaaattttcaagnnnnnnnnncactagccataaggcgatctaagcgagataacgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||| |||||||||    
T  31481175 tgaaataagatatcctaactaaacttactaatcactttttccaccaaaattttcaagaaaaaaaaacactagccataaggcgatataagcaagataacgc 31481274  T
Q  301 aacaaaaatcttcttgattgtaatttcaattgtttaacaaggttgcaacaccatctttattagcttcacttgaagcnnnnnnnttcttctagctacacgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||| ||||| ||    
T  31481275 aacaaaaatcttcttgattgtaatttcaattgtttaacaaggttgcaacaccatctttattagcttcactttaagcaaaaaaattcttctaactacaagt 31481374  T
Q  401 atttag 406  Q
    ||||||    
T  31481375 atttag 31481380  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 24479593 - 24479643
Alignment:
Q  202 gaaataagatatcctaactaaacttactaatcactttttccaccaaaattt 252  Q
    ||||||||||||||||||||| | ||  |||||||||||||||||||||||    
T  24479593 gaaataagatatcctaactaagcctagaaatcactttttccaccaaaattt 24479643  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 7702743 - 7702791
Alignment:
Q  118 gtggattatttataggattttttgtagtcaatccaccacattgaatcta 166  Q
    |||||||||  |||||| |||||||| |||||| |||||||||||||||    
T  7702743 gtggattatcaataggagtttttgtactcaatctaccacattgaatcta 7702791  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 5001101 - 5001179
Alignment:
Q  178 aacaattttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttccaccaaaattttcaa 256  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||||||    
T  5001101 aacaattttggataacaagataatgaaataagataccttaactaaacctactaatcactttttccatcaaaattttcaa 5001179  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 6223812 - 6223872
Alignment:
Q  199 aatgaaataagatatcctaactaaac---ttactaatcactttttccaccaaaattttcaa 256  Q
    ||||||||||||||||||||||||||    || ||||||||||||| ||||||| ||||||    
T  6223812 aatgaaataagatatcctaactaaacccagtaataatcactttttctaccaaaaatttcaa 6223872  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 21318106 - 21318181
Alignment:
Q  178 aacaattttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttccaccaaaatttt 253  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  21318106 aacaatttcgaataacaagacaataaaataagatatcctaactaaacctactaatcacttattccaccaaaatttt 21318181  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 21317880 - 21317937
Alignment:
Q  178 aacaattttgaataacaagataatgaaataagatatcctaactaaacttactaatcac 235  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  21317880 aacaatttcgaataacaagacaatgaaataagatatcctaactaaacctactaatcac 21317937  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 21317993 - 21318050
Alignment:
Q  178 aacaattttgaataacaagataatgaaataagatatcctaactaaacttactaatcac 235  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  21317993 aacaatttcgaataacaagacaatgaaataagatatcctaactaaacctactaatcac 21318050  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 37750779 - 37750723
Alignment:
Q  118 gtggattatttataggattttttgtagtcaatccaccacattgaatctaaaaattac 174  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||    
T  37750779 gtggattatctataggagtttttgtactcaatccaccacattgaatctaaagattac 37750723  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 24558731 - 24558665
Alignment:
Q  181 aattttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttccaccaa 247  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||  || |||||| ||||||||||||    
T  24558731 aattttggataacaagacaatgaaattagatatcctaactaaatctaataatcattttttccaccaa 24558665  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 21317785 - 21317834
Alignment:
Q  118 gtggattatttataggattttttgtagtcaatccaccacattgaatctaa 167  Q
    ||||||||| ||||||  |||||||||||||||||||||| |||||||||    
T  21317785 gtggattatgtataggtgtttttgtagtcaatccaccacactgaatctaa 21317834  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 48465697 - 48465742
Alignment:
Q  178 aacaattttgaataacaagataatgaaataagatatcctaactaaa 223  Q
    |||||||||| ||||||||| || || |||||||||||||||||||    
T  48465697 aacaattttggataacaagacaaagatataagatatcctaactaaa 48465742  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 30129372 - 30129295
Alignment:
Q  178 aacaattttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttccaccaaaattttcaa 256  Q
    |||||||||  ||||||||| ||||||||||||||||||||| |||| ||||||| | |||||||| ||||||||||||    
T  30129372 aacaattttttataacaagaaaatgaaataagatatcctaaccaaacctactaataattttttcca-caaaattttcaa 30129295  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 30129295 - 30129229
Alignment:
Q  301 aacaaaaatcttcttgattgtaatttcaattgtttaacaaggttgcaacaccatctttattagcttcac 369  Q
    ||||||||||||  || ||||| |||||||||||| ||||| ||||||||||||||||| |||||||||    
T  30129295 aacaaaaatctt--tggttgtactttcaattgtttgacaagcttgcaacaccatctttaatagcttcac 30129229  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 1943095 - 1943148
Alignment:
Q  309 tcttcttgattgtaatttcaattgtttaacaaggttgcaacaccatctttatta 362  Q
    |||||||| ||||| |||||||||||| | ||| ||||||||||||||| ||||    
T  1943095 tcttcttggttgtactttcaattgtttgataagtttgcaacaccatcttaatta 1943148  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 30129481 - 30129428
Alignment:
Q  118 gtggattatttataggattttttgtagtcaatccaccacattgaatctaaaaat 171  Q
    ||||||||| |||| |  ||||||||||||||||| ||||||||||||| ||||    
T  30129481 gtggattatctataagtgtttttgtagtcaatccatcacattgaatctagaaat 30129428  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 34375266 - 34375319
Alignment:
Q  199 aatgaaataagatatcctaactaaacttact-aatcactttttccaccaaaatt 251  Q
    |||||||||||||||||||||||||  || | ||||||||||| ||||||||||    
T  34375266 aatgaaataagatatcctaactaaatctagtaaatcacttttttcaccaaaatt 34375319  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 1942989 - 1943033
Alignment:
Q  200 atgaaataagatatcctaactaaacttactaatcactttttccac 244  Q
    |||||||||||| |||||||||||| || | ||||||||||||||    
T  1942989 atgaaataagatgtcctaactaaacctatttatcactttttccac 1943033  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 28637778 - 28637844
Alignment:
Q  178 aacaattttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttccac 244  Q
    |||||||||| ||||||||| ||| ||||| ||| |||||||||||| |||||||||||||||||||    
T  28637778 aacaattttggataacaagacaataaaataggatttcctaactaaacatactaatcactttttccac 28637844  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 17113364 - 17113421
Alignment:
Q  184 tttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttc 241  Q
    |||| ||||||||| |||||||||||||||||||||||||| || |||||||||||||    
T  17113364 tttggataacaagacaatgaaataagatatcctaactaaacctagtaatcactttttc 17113421  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 18308460 - 18308516
Alignment:
Q  118 gtggattatttataggattttttgtagtcaatccaccacattgaatctaaaaattac 174  Q
    ||||||||| |||||||  | ||||| |||||||||||||||||||||| |||||||    
T  18308460 gtggattatctataggagctgttgtactcaatccaccacattgaatctagaaattac 18308516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 39367929 - 39367881
Alignment:
Q  118 gtggattatttataggattttttgtagtcaatccaccacattgaatcta 166  Q
    ||||||||| ||||||| ||||| || ||||||||||||||||||||||    
T  39367929 gtggattatctataggagtttttttactcaatccaccacattgaatcta 39367881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 39367811 - 39367758
Alignment:
Q  199 aatgaaataagatatcctaactaaacttact---aatcactttttccaccaaaa 249  Q
    |||||||||||||||||||||||||| || |   ||||||||||||||||||||    
T  39367811 aatgaaataagatatcctaactaaacctagtaacaatcactttttccaccaaaa 39367758  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 35083428 - 35083472
Alignment:
Q  199 aatgaaataagatatcctaactaaacttactaatcactttttcca 243  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  35083428 aatgaaataagatatcctaactaaacttattaatcactttttcca 35083472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 35083276 - 35083328
Alignment:
Q  119 tggattatttataggattttttgtagtcaatccaccacattgaatctaaaaat 171  Q
    |||||||| |||| || |||||||| |||||||||||||||||||||| ||||    
T  35083276 tggattatgtataagagtttttgtactcaatccaccacattgaatctagaaat 35083328  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 42076473 - 42076556
Alignment:
Q  176 ttaacaattttgaataacaagataatgaaataagatatcctaactaa----acttactaatcactttttccaccaaaattttca 255  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||||||    ||| ||||| |||||||||||| |||| |||||    
T  42076473 ttaacaattttggataacaagacaatgatataagatatcctaactaaatctactaactaaccactttttccactaaaagtttca 42076556  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 10869967 - 10870018
Alignment:
Q  120 ggattatttataggattttttgtagtcaatccaccacattgaatctaaaaat 171  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  10869967 ggattatctataggagtttttgtagtctatccaccacattgaatctagaaat 10870018  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 38449770 - 38449722
Alignment:
Q  118 gtggattatttataggattttttgtagtcaatccaccacattgaatcta 166  Q
    ||||||||| ||||||| |||||||| |||||| |||||||||||||||    
T  38449770 gtggattatctataggagtttttgtactcaatctaccacattgaatcta 38449722  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 31571344 - 31571383
Alignment:
Q  135 ttttttgtagtcaatccaccacattgaatctaaaaattac 174  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  31571344 ttttttgtactcaatccaccacattgaatctagaaattac 31571383  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 445983 - 445912
Alignment:
Q  182 attttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttccaccaaaatttt 253  Q
    |||||| ||||||| | ||| ||| ||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  445983 attttggataacaaaacaataaaaaaagatatccaaactaaacctacgaatcactttttccacaaaaatttt 445912  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 8248550 - 8248623
Alignment:
Q  299 gcaacaaaaatcttcttgattgtaatttcaattgtttaacaaggttgcaacaccatctttattagcttcacttg 372  Q
    |||||| || |||||||| ||||| |||||| ||||| ||||| |||||| | |||||||| ||||||||||||    
T  8248550 gcaacataattcttcttggttgtactttcaactgtttgacaagtttgcaataacatctttaatagcttcacttg 8248623  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 26608348 - 26608297
Alignment:
Q  123 ttatttataggattttttgtagtcaatccaccacattgaatctaaaaattac 174  Q
    |||| ||||| | ||||| || ||||||||||||||||||||||||||||||    
T  26608348 ttatctatagcagtttttttactcaatccaccacattgaatctaaaaattac 26608297  T

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