View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18967_low_1 (Length: 453)
Name: NF18967_low_1
Description: NF18967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18967_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 12762567 - 12762996
Alignment:
| Q |
15 |
aaaaacaggcttgatgataatcgtagtggtagaagtatacaacatgagcacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcag |
114 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12762567 |
aaaaacaggcttgatgataatcgttgtggtagtagtatacaacatgagcacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcag |
12762666 |
T |
|
| Q |
115 |
ttttttcgataacacatttataacaagtccaacttgttgttcgggtgacatcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatg |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12762667 |
ttttttcgataacgcatttataacaagtccaacttgttgttcgggtgacatcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatg |
12762766 |
T |
|
| Q |
215 |
tcaacaatgataggtgaattttgttgctttccttgatgcgtttcaattcatgagcagtttcagacagacgtgtgtaattttttaaaatggttctcaaatt |
314 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12762767 |
tcaacaatgataggtgaa-tttgttgctttccttgatgcgtttcaattcatgagcagtttcagacagacgtgtgtaattttttaaaatgtttctcaaatt |
12762865 |
T |
|
| Q |
315 |
cttgtgaagaccatccgacaatgatctactagagtatctgatttagttctacaatttctagtattttagctaatcctaactttgaagtaaagtcttttaa |
414 |
Q |
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| T |
12762866 |
cttgtgaagaccatccgacaatgatctactagagtatctgatttagttcttcaatttctagtattttagctaatcctaactttgaagtaaagtcttttaa |
12762965 |
T |
|
| Q |
415 |
gcaacaaacgaatatgattgtttatattctt |
445 |
Q |
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| T |
12762966 |
gcaacaaacaaatatgattgtttatattctt |
12762996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 12701567 - 12701996
Alignment:
| Q |
15 |
aaaaacaggcttgatgataatcgtagtggtagaagtatacaacatgagcacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcag |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12701567 |
aaaaacaggcttgatgataatcgttgtggtagtagtatacaacatgagcacaattgggtgaaaccgaattatggccaggtgaaatgcaatgtcgatgcag |
12701666 |
T |
|
| Q |
115 |
ttttttcgataacacatttataacaagtccaacttgttgttcgggtgacatcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatg |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12701667 |
ttttttcgataacgcatttataacaagtccaacttgttgttcgggtgacatcaatggattctttgcgatgacaaaaacaacttggaaatgtgtatgaatg |
12701766 |
T |
|
| Q |
215 |
tcaacaatgataggtgaattttgttgctttccttgatgcgtttcaattcatgagcagtttcagacagacgtgtgtaattttttaaaatggttctcaaatt |
314 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
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| T |
12701767 |
tcaacaatgataggtgaa-tttgttgctttccttgatgcgtttcaattcatgagcagtttcagacagacatgtgtaattttttaaaatgtttatcaaatt |
12701865 |
T |
|
| Q |
315 |
cttgtgaagaccatccgacaatgatctactagagtatctgatttagttctacaatttctagtattttagctaatcctaactttgaagtaaagtcttttaa |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12701866 |
cttgtgaagaccatccgacaatgatctactagagtatctgatttagttcttcaatttctagtattttagctaatcctaactttgaagtaaagtcttttaa |
12701965 |
T |
|
| Q |
415 |
gcaacaaacgaatatgattgtttatattctt |
445 |
Q |
| |
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||||||||| ||||||||||||||||||||| |
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|
| T |
12701966 |
gcaacaaacaaatatgattgtttatattctt |
12701996 |
T |
|
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