View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18967_low_6 (Length: 202)
Name: NF18967_low_6
Description: NF18967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18967_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 51942375 - 51942545
Alignment:
| Q |
18 |
tcatgttcaaggtatatatattgtatatcttattcttttccctacaatctatgcactgcttttatttcatgttaattaactaaaagatataccatcataa |
117 |
Q |
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| T |
51942375 |
tcatgttcaaggtatatatattgtatatcttattcttttccctacaatctatgcactgcttttatttcatgttaattaactaaaagatataccatcataa |
51942474 |
T |
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| Q |
118 |
acaattagtttttatttcattagccaattttgagcaattatgattttacacttgagcatgcataacctctgtg |
190 |
Q |
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| T |
51942475 |
acaattagtttttatttcattagcc--ttttgagcaattatgattttacacttgagcatacataacctttgtg |
51942545 |
T |
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