View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18969_high_1 (Length: 312)
Name: NF18969_high_1
Description: NF18969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18969_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 44815863 - 44816140
Alignment:
| Q |
19 |
agtttactaagatatactcaaacacacaacacgaacacaagtaatttattaaactggttgagtaaa-cgatacacatgcatcatgtacaaaacaacacaa |
117 |
Q |
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| T |
44815863 |
agtttactaagatatactcaaacacacaacacgaacacaagtaatttattaaactggttgagtaaaacgatacacatgcatcatgtaaaaaacaacacaa |
44815962 |
T |
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| Q |
118 |
atacttgcaatcttaagtaataaacgatacacacacacatcatgtaaacaataataaataaaaactagttatttatgatggtgtgttccaggaagcttat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44815963 |
atacttgcaatcttaagtaataaacgatacacacaca--tgatgtaaacaataataaataaaaactagttatttatgatggtgtgttccaggaagcttct |
44816060 |
T |
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| Q |
218 |
cctttatcttgtcaattattcctttcttgttgtgatggttgtttgtcttgttcccatcaacaaaaacaccgtcgtctgtg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44816061 |
cctttatcttgtcaattattcctttcttgttgtgatggttgtttgtcttgttcccatcaacaaaaacaccgtcgtctgtg |
44816140 |
T |
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