View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18969_high_2 (Length: 250)
Name: NF18969_high_2
Description: NF18969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18969_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 40543320 - 40543097
Alignment:
| Q |
11 |
agaatatcagaagtataagtatacgaatgacatatgtcgattcatgacagcttaccatagtaattaatatagtaaataataataaattaaaccataagaa |
110 |
Q |
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| T |
40543320 |
agaaaatcagaagtataagtatacgaatgacatatgtcgattcatgacagcttaccatagtaattaatatagtaaataataataaattaaaccataagaa |
40543221 |
T |
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| Q |
111 |
agtactaagattttacagaaagaaacgaagaagnnnnnnnntacagttacgtttcaatttcaatgaattgctttcatttagtctattacatatgcagcag |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40543220 |
agtactaagattttacagaaagaaacgaagaa-aaaaaaaatacagttaggtttcaatttcaatgaattgctttcatttagtctattacatatgcagcag |
40543122 |
T |
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| Q |
211 |
aaccttttattatagtagttgttca |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
40543121 |
aaccttttattatagtagttgttca |
40543097 |
T |
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