View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1896_high_15 (Length: 304)
Name: NF1896_high_15
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 12639239 - 12639510
Alignment:
| Q |
16 |
atggcaatgagcaacaacatcataggattcataaacctagtagctgtaatcctctcaatcccaatcattggtgctggaatctggctaacaaacgaaccag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12639239 |
atggcaatgagcaacaacatcataggattcataaacctagtagctgtaatcctctcaatcccaatcattggtgctggaatctggctaacaaacgaaccag |
12639338 |
T |
|
| Q |
116 |
cagacacatgtgtcaaatttctccaatggccagtcataatctttggtgttcttctcttagttgtgtctttagctggtctcattggttccttttggagaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
12639339 |
cagacacatgtgtcaaatttctccaatggccagtcataatccttggtgttcttctcttagttgtgtctcttgctggtctcattggttccttttggagaat |
12639438 |
T |
|
| Q |
216 |
ctcatgtctcctaatattttacctagttgctatgcttgtgcttattatcttgctagtttgtttggttatttt |
287 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12639439 |
ctcatgtctcctaatattctacctagttgctatgcttgtgcttattatcttgctagtttgtttggttatttt |
12639510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 27778070 - 27778203
Alignment:
| Q |
16 |
atggcaatgagcaacaacatcataggattcataaacctagtagctgtaatcctctcaatcccaatcattggtgctggaatctggctaacaaacgaaccag |
115 |
Q |
| |
|
|||||| |||||||||| | |||||| |||||||| | | || || |||||||||||||||| |||||||||||||| |||||| ||| || || |
|
|
| T |
27778070 |
atggcattgagcaacaatgtgataggaatcataaacttcattgcagttctcctctcaatcccaataattggtgctggaatttggctatcaactttacaag |
27778169 |
T |
|
| Q |
116 |
cagacacatgtgtcaaatttctccaatggccagt |
149 |
Q |
| |
|
|||| ||||||||||| | || ||||||||||| |
|
|
| T |
27778170 |
cagaatcatgtgtcaaaatcctacaatggccagt |
27778203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University