View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_high_21 (Length: 246)
Name: NF1896_high_21
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 41754846 - 41755058
Alignment:
| Q |
18 |
gttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaaacaattttacagagctgctgttgttgtcgtatacacc |
117 |
Q |
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| T |
41754846 |
gttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaaacaattttacagagttgctgtt---gtcgtatacacc |
41754942 |
T |
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| Q |
118 |
atatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatgatttcgaaacaataaaaatgaataaaccaaagacatttaa |
217 |
Q |
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| T |
41754943 |
atatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatgatttcgaaacaataaaaatgaataaaccaaagacatttaa |
41755042 |
T |
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| Q |
218 |
ttgaattattgtgatg |
233 |
Q |
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| T |
41755043 |
ttgaattattatgatg |
41755058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 41760756 - 41760936
Alignment:
| Q |
18 |
gttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaaacaattttacagagctgctgttgttgtcgtatacacc |
117 |
Q |
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| T |
41760756 |
gttgcttgtacgatggtgagcccataaaattgcctgtatcagcatatgagtctccaaatacaaacaattttacaga------gtttttgtcatacacacc |
41760849 |
T |
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| Q |
118 |
atatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatgatttcgaaacaataaaaatgaataaac |
204 |
Q |
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| T |
41760850 |
atatgatttcttagtcccttcgaccacttctgtaaaatttgcattaatttatgtcacacaatagaaaaccaataaaaatgaataaac |
41760936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 42225933 - 42225971
Alignment:
| Q |
50 |
cctgtgtcagcatatgaatctccaaatacaaacaatttt |
88 |
Q |
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| T |
42225933 |
cctgtgtctgcatatgaatctccaaagacaaacaatttt |
42225971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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