View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_high_25 (Length: 216)
Name: NF1896_high_25
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 11297989 - 11297790
Alignment:
| Q |
1 |
cttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaagcaag |
100 |
Q |
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| T |
11297989 |
cttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaagcaag |
11297890 |
T |
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| Q |
101 |
acaattgagaaaagattaactactttgctgctggcca---tgacaatgtagttaattatgcttatgctcatccataggaacagtttttataggctaaaac |
197 |
Q |
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| T |
11297889 |
acaattgataaaagattaactactttgctgctggccatattgacaatgtagttaattatgcttatgctcatccataggaacagtttttataggctaaaac |
11297790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 11292636 - 11292437
Alignment:
| Q |
1 |
cttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaagcaag |
100 |
Q |
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| T |
11292636 |
cttgcagataccatcgtcattgttatctagagacgatgctgaaaattcattactagtgtttatggtttttcttccttgtactattgtaatgcaaagcatg |
11292537 |
T |
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| Q |
101 |
acaattgagaaaagattaactactttgctgctggcca---tgacaatgtagttaattatgcttatgctcatccataggaacagtttttataggctaaaac |
197 |
Q |
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| T |
11292536 |
acaattgagaaaagattaactactttcctcctggccatattgacaatgtggttaattatgtttatgctcatccataggaacagtttttataggctaaaac |
11292437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 30909595 - 30909459
Alignment:
| Q |
2 |
ttgcagacaccatcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaagcaaga |
101 |
Q |
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| T |
30909595 |
ttgcagatgccatcatcgttgttaactagagacgatgctgaaaattcattgttagtgttaagtgcttttcttccttgtgctattgtaatgcaaatcaaga |
30909496 |
T |
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| Q |
102 |
caattgagaaaagattaactactttgctgctggccat |
138 |
Q |
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| T |
30909495 |
ctattgagaaaagaccaactactctgctgctggccat |
30909459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 30903122 - 30902969
Alignment:
| Q |
13 |
atcatcattgttaactagagacgatggtgaaaattcaatgctagtgttaagtgtttttcttccttgtactattgtaatgcaaagcaagacaattgagaaa |
112 |
Q |
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| T |
30903122 |
atcatcatcggtaactagagaggatgctgaaatttcattggttgtgtgaagtgtttttcttccttgtgctactgtaatgcaaaacaagactattgagatt |
30903023 |
T |
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| Q |
113 |
agattaactactttgctgctggcca---tgacaatgtagttaattatgcttatg |
163 |
Q |
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| T |
30903022 |
agactaactagtattgtgctggccatgttgacaatgtggttaattttgcttatg |
30902969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 36706364 - 36706423
Alignment:
| Q |
56 |
gtgttaagtgtttttcttccttgtactattgtaatgcaaagcaagacaattgagaaaaga |
115 |
Q |
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|||| ||||||||||||||||||| | ||||||||||||||||||| | ||||| |||| |
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| T |
36706364 |
gtgtaaagtgtttttcttccttgtgttgttgtaatgcaaagcaagactaatgagataaga |
36706423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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