View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_high_3 (Length: 516)
Name: NF1896_high_3
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 26600359 - 26599865
Alignment:
| Q |
16 |
taaagtgtaacggatttttacaaaatcagggtggttcattgtgattctgccgaactcactgtcaatccagacatgcatttagatcgatcgtttaacaatc |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26600359 |
taaagtgtaacggatttttacaaaatcaaggtggttcattgtgattctgccgaactcactgtcaatccagacatgcatttagatcgatcgtttaacaatc |
26600260 |
T |
|
| Q |
116 |
atcgatatctatacataaaccctcatcagttaatggttttggtttactttattgatcttcaagccaaaattctcccacaaatttccaccctcactgatca |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26600259 |
atcgatatctatacataaaccctcatcggttaatggttttggtttactttattgatcttcaagccaaaattctcccacaaatttccaccctcactaatca |
26600160 |
T |
|
| Q |
216 |
tgaaaggaaagcaagtatcaccattagcaacatttccaacattagaatcagaaggtgaagaaccatgatcattcctttgaagtttcacaatctcttctct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26600159 |
tgaaaggaaagcaagtatcaccattagcaacatttccaacattagaatcagaaggtgaagaaccatgatcattcctttgaagtttcacaatctcctctct |
26600060 |
T |
|
| Q |
316 |
ttgatcattaacatcacaataaccacttccttgattgtacatagaacattgttcattattgttgaagtaaaaactctcctttctctttctgtttccttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26600059 |
ttgatcattaacatcacaataaccacttccttgattgtacatagaacattgttcattattgttgaagtaaaaactctcctttctctttctgtttccttct |
26599960 |
T |
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| Q |
416 |
ttagaatcatcccttggagtacaattatcagaacctctcacagtactattcaagatttcactcccatcttcattttgattttgaatctctgctcc |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26599959 |
ttagaatcatcccttggagtacaattatcagaacctctcacagtactattcaagatttcactcccatcttcattttgattttgaatctctgctcc |
26599865 |
T |
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