View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_high_8 (Length: 416)
Name: NF1896_high_8
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 115 - 400
Target Start/End: Original strand, 33344892 - 33345184
Alignment:
| Q |
115 |
ttcagatgatagctaaagttaaaacattctcaccaaataaagctgaagttcaaaactaaataattgagattgagtacacttcataactactactgggggg |
214 |
Q |
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| T |
33344892 |
ttcagatgatagctaaagttaaaacattctcaccaaataaagctgaagttcaaaactaaataattgagattgagtacacttcataactactactgggggg |
33344991 |
T |
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| Q |
215 |
ctacctcatttggataaaacttagttaacatttcaaatcacactataaaaaataacttaagaactatacatgatata--------tggttatcatgttat |
306 |
Q |
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| T |
33344992 |
ctacctcatttcgataaaacttagttaacatttcaaatcacactat-aaaaataacttaagaactatacatgatatatctaaatttggttatcatgttat |
33345090 |
T |
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| Q |
307 |
tcatacgacctccaccgttggttaatattgattaatctctgttgggaaacccgtgaatcatacaagatgagttctcgtctttcgattgaatttt |
400 |
Q |
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| T |
33345091 |
tcatacgaccgccaccgttggttaatattgactaatcttcattgggaaacccgtgaatcatacaaaataagttctcgtctttcgactgaatttt |
33345184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39074145 - 39074088
Alignment:
| Q |
1 |
aaaatacttctccaatttcatacccatacataaataatggtaaggtttttgtcttata |
58 |
Q |
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| T |
39074145 |
aaaatacttctccaatttcatacacatacataaataatggtaaggttgttgtcttata |
39074088 |
T |
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