View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_10 (Length: 398)
Name: NF1896_low_10
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 171 - 383
Target Start/End: Complemental strand, 43905767 - 43905555
Alignment:
| Q |
171 |
cgcaattaggattatgtggttttcttttattttacgtttctactttagaaaatatactcttcatcttccttatccattcatgtgatcatcatattcnnnn |
270 |
Q |
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| T |
43905767 |
cgcaattaggattatgtggtttccttttattttacgtttctactttagaaaatatactcttcatcttccttatccattcatgtgatcatcatattctttt |
43905668 |
T |
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| Q |
271 |
nnnagggagatattattttttgttaaacctttgataatgtccattttcagtgtctttttcaagagtcacagtaaagtgaaataaataaaatgtatttgca |
370 |
Q |
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| T |
43905667 |
tttagggagatattattttttgttaaacctttgataatgtccattttcagtgtctttttcaagagtcacagtaaagtgaaataaataaaatgtatttgca |
43905568 |
T |
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| Q |
371 |
tgcaattatatac |
383 |
Q |
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| T |
43905567 |
tgcaattatatac |
43905555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 43905925 - 43905801
Alignment:
| Q |
13 |
aatattgattgggtaaaaaattatagaccaaaaaagtatgttaaaattcaagaacggaggtgtgatatggattgattttatttttgccaataataataga |
112 |
Q |
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| T |
43905925 |
aatattgattgggtaaaaaattatagaccaaaaaagtatgttaaaattcaagaacggaggtgtgatatggattgattttatttttgccaataataataga |
43905826 |
T |
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| Q |
113 |
tcaaatagattattaagcaactatt |
137 |
Q |
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| T |
43905825 |
tcaaatagattattaagcaagtatt |
43905801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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