View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_11 (Length: 384)
Name: NF1896_low_11
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 32685117 - 32684742
Alignment:
| Q |
1 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685117 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
32685018 |
T |
|
| Q |
101 |
ttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaa |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
32685017 |
ttctttctgcttttcaattttatccagggcagtccgcgctgcattcaacaactccaatccaactgctggtttataggttaattaatattaaagaactcaa |
32684918 |
T |
|
| Q |
201 |
attcaacaactccaatccaactgctggtttcttaatttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684917 |
attcaacaactccaatccaactgctggtttcttaatttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgag |
32684818 |
T |
|
| Q |
301 |
ttagatctatgaaagcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggttgatgatgtc |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32684817 |
ttagatctatgaaagcggtatcatccgccaacactttagtagtctcagattcttatgattcgaggtttgtgatgtc |
32684742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 32683407 - 32683211
Alignment:
| Q |
1 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
32683407 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgcagcccttttaaaatcagc |
32683308 |
T |
|
| Q |
101 |
ttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaa |
200 |
Q |
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|||| |||||||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
32683307 |
ttctctctgcttttcaatttcatccagggcagtacgcgctgcattcaacaactccaa-----ctgctggtttataggttaattaatattaaagaactcaa |
32683213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 32559538 - 32559678
Alignment:
| Q |
236 |
tttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacact |
335 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32559538 |
tttctagaatggcgtggcaaaaattttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgctaacact |
32559637 |
T |
|
| Q |
336 |
ttagtagtctcagattcttatgattcgaggttgatgatgtc |
376 |
Q |
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| T |
32559638 |
ttagtagtctcggattcttatgattcgaggtttgtgatgtc |
32559678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33010908 - 33011092
Alignment:
| Q |
1 |
ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagc |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
33010908 |
ttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaac------------tttcttaatttcaacttcatcccttttaaaatcaga |
33010995 |
T |
|
| Q |
101 |
ttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaa |
200 |
Q |
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||| ||||||||||||| || ||||| |||| || ||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
33010996 |
ttccttctgcttttcaatttcatccaaggcattcagcgctgcattcgccaacttcaa-----ctgctggtttataggttaattaatattaaagaactcaa |
33011090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 28711125 - 28711086
Alignment:
| Q |
163 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
202 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
28711125 |
ctgcaggtttagaggttaattaatattaaagaactcaaat |
28711086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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