View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_12 (Length: 367)
Name: NF1896_low_12
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 46796177 - 46796305
Alignment:
| Q |
15 |
actttgcacatagctacatttattttgtgaaatgtaactatactgttaccaatctgagttggggcagacggacgaaaatatagctcaagtatatcaccac |
114 |
Q |
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| T |
46796177 |
actttgcacatagctacatttattttgtgaaatgtaactatactgttaccaatctgagttggggcagacggacgaaaatatagcccaagtatatcaccac |
46796276 |
T |
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| Q |
115 |
atcatataattgatcaaaagtacacatac |
143 |
Q |
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| T |
46796277 |
atcatataattgatcaaaagtacacatac |
46796305 |
T |
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Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 182 - 358
Target Start/End: Original strand, 46796344 - 46796519
Alignment:
| Q |
182 |
gggtacaaggacacacatacttcccctnnnnnnnn--ggacacacatactttttaatcatataatgggaaaacaattttgnnnnnnnnaacggctaaaca |
279 |
Q |
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| T |
46796344 |
gggtacaaggacacacatacttcccctaaaaaaaaaaggacacacatactttttaatcatataatgggaaaacaatttt----tttttaacggctaaaca |
46796439 |
T |
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| Q |
280 |
aatcgagatataatttt-ttaataaattgaaatgatattgtagttggttgactgccaccatattgagatagcatattctt |
358 |
Q |
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| T |
46796440 |
aatcgagatataatttttttaataaattgaaatgatattgtagttggttgactgccaccatgttgagatagcatattctt |
46796519 |
T |
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