View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1896_low_13 (Length: 343)
Name: NF1896_low_13
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 61 - 328
Target Start/End: Original strand, 12069633 - 12069900
Alignment:
| Q |
61 |
aatcacagttgcatagtgattttcttgaagtttgaaagtgtaacttttggaaaatcgcactggcgcactatgatcttatcaaactcaatgccagttcaaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12069633 |
aatcacagttgcatagtgattttcttgaagtttcaatgtgtaacttttggaaaatcgcactggcgcactgtgatcttatcaaactcaatgccagttcaaa |
12069732 |
T |
|
| Q |
161 |
catgcatgaaagtttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12069733 |
catgcatgaaagtttttacttgacttacaatgggttcataaatgtatcgtatctcagttttcacaaagtcgcatgtatggcagtatattccaatttgttc |
12069832 |
T |
|
| Q |
261 |
atccaatcgataatcatgttcacatatttccttggattctttctttgtgtcagctaaatcctcatcag |
328 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12069833 |
atccaatcgataatcatgttctcatatttccttgaattctttctttgtgtcagctaaatcctcatcag |
12069900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 36374551 - 36374276
Alignment:
| Q |
19 |
acatgtataattccaagtttgaaatcatggtgaatctggtaaaatcacagttgcatagtgattttcttgaagtttgaaagtgtaacttttggaaaatcgc |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36374551 |
acatgtataattaaaagtttgaaatcatggtggatctggtaaaatcacagctgcatagtgattttcttgaagtttcaaagtgtaacttttggaaaatcgc |
36374452 |
T |
|
| Q |
119 |
actggcgcactatgatcttatcaaactcaatgccagttcaaacatgcat-ga--------aagtttttacttgacttacaatgggttcagaaatgtatcg |
209 |
Q |
| |
|
| || | |||| |||| |||||||| ||| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36374451 |
agtgacacactgtgattttatcaaattcattgcgagttcaaacatgcatagattattcataagtttttacttgacttacaatgggttcagaaatgtatcg |
36374352 |
T |
|
| Q |
210 |
tatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgataatcatgttcacat |
285 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36374351 |
tatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgataatcatgtttacat |
36374276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 316
Target Start/End: Original strand, 32251159 - 32251302
Alignment:
| Q |
173 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgata |
272 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||| || |||||||||| || ||| | | |||||||||||||||| ||||||||||| ||| |
|
|
| T |
32251159 |
tttttacttgacttacaaatggctcagaaatgtcccgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctata |
32251258 |
T |
|
| Q |
273 |
atcatgttcacatatttccttggattctttctttgtgtcagcta |
316 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||| || ||||||| |
|
|
| T |
32251259 |
atcatgttcacaactttcattgaattctttcttggtatcagcta |
32251302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 38208308 - 38208177
Alignment:
| Q |
173 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgata |
272 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || || ||| ||||||||||||||||| || || |||||||||||||| |||||| ||| ||| |
|
|
| T |
38208308 |
tttttacttaacttacaaagggttcagaaatgtctcctacctcggttttcacaaagccgcatctaagg-tgtatattccaatttcttcatctaatttata |
38208210 |
T |
|
| Q |
273 |
atcatgttcacatatttccttggattctttctt |
305 |
Q |
| |
|
| ||| ||||| |||| |||| |||| ||||| |
|
|
| T |
38208209 |
gttatgctcacaaatttacttgaattccttctt |
38208177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 32228619 - 32228654
Alignment:
| Q |
180 |
ttgacttacaatgggttcagaaatgtatcgtatctc |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32228619 |
ttgacttacaatgggttcagaaatgtctcgtatctc |
32228654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 8845552 - 8845671
Alignment:
| Q |
173 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgata |
272 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| || | ||| ||||||| |||| ||||| || ||| |
|
|
| T |
8845552 |
tttttacttgacttacaactggttcagaaatgtctcgtatctcggttttcacagagccgcagctaagacagaatattccgatttcttcattgaacgtata |
8845651 |
T |
|
| Q |
273 |
atcatgttcacatatttcct |
292 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
8845652 |
gtcatgttcacaaatttcct |
8845671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 8809664 - 8809724
Alignment:
| Q |
173 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgca |
233 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||| |||||| | |||||| ||||||| |
|
|
| T |
8809664 |
ttttcacttgacttacaatgtgttcataaatgtatcatatctcgttattcacagagccgca |
8809724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 35960810 - 35960873
Alignment:
| Q |
221 |
tcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgataatcatgttcaca |
284 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
35960810 |
tcacaaagccacatatacagcagtatattccaatttcttcatccaatctattatcatgttcaca |
35960873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University