View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_17 (Length: 278)
Name: NF1896_low_17
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 32684765 - 32684495
Alignment:
| Q |
1 |
ttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaat |
100 |
Q |
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| T |
32684765 |
ttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaat |
32684666 |
T |
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| Q |
101 |
gatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagg |
200 |
Q |
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| T |
32684665 |
gatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagg |
32684566 |
T |
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| Q |
201 |
gaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgtttgatgatgt |
271 |
Q |
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| T |
32684565 |
gaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgttttatgatgt |
32684495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 32559715 - 32559928
Alignment:
| Q |
38 |
atgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatct |
137 |
Q |
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| T |
32559715 |
atgtttaaggctgaatgaaaagtatgaagaaaatcagaatagagaatgaacaagaaagaa--------------------aatgatacactgatgcatct |
32559794 |
T |
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| Q |
138 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactga |
237 |
Q |
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| T |
32559795 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctctaactaagtatactga |
32559894 |
T |
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| Q |
238 |
gatgtaagtttctttgccaactgtttgatgatgt |
271 |
Q |
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| T |
32559895 |
gatgtaagtttctttgccaactgttttatgatgt |
32559928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32559655 - 32559694
Alignment:
| Q |
1 |
ttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
40 |
Q |
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| T |
32559655 |
ttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
32559694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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