View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1896_low_2 (Length: 537)
Name: NF1896_low_2
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 6993819 - 6993320
Alignment:
| Q |
18 |
tccttcttatagaccgagtcagagtgaagtttaacaacttgtcataattaaaggtacgttttttatattaaaacaattnnnnnnnnnnnnnnngggatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6993819 |
tccttcttatagaccgagtcagagtgaagtttaacaacttgtcataattaaaggtacgttttttatattaaaacaatttttttctctct----gggatat |
6993724 |
T |
|
| Q |
118 |
atgctgaatttgttatattattacatgcagatgaagctgagattgcaaagagcagagtgaagtgaagtgaagtttgttagagttggaaatgaaaatgaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993723 |
atgctgaatttgttatattattacatgcagatgaagctgagattgcaaagagcagagtgaagtgaagtgaagtttgttagagttggaaatgaaaatgaag |
6993624 |
T |
|
| Q |
218 |
agtggaataatagtgagtgttgttatggtattgtttttgttagtagagttaacagtgagtttgagttcaagaactgaatggtcagcgttattggagcttc |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993623 |
agtggaataacagtgagtgttgttatggtattgtttttgttagtagagttaacagtgagtttgagttcaagaactgaatggtcagcgttattggagcttc |
6993524 |
T |
|
| Q |
318 |
gttcatcgatggggataagggggaaggagtggcctnnnnnnnctgatccatgtcggaactggaccggtgttgagtgccggaacgatcaagttgttggtat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993523 |
gttcatcgatggggataagggggaaggagtggcctaaaaaaactgatccatgtcggaactggaccggtgttgagtgccggaacgatcaagttgttggtat |
6993424 |
T |
|
| Q |
418 |
caaagtggctgggttgaatagaacccacaaaggtcgtcttaacccaagttttgaagttgatgctcttgcaaatttcacactattggagtctttcaatgct |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993423 |
caaagtggctgggttgaatagaacccacaaaggtcgtcttaacccgagttttgaagttgatgctcttgcaaatttcacactattggagtctttcaatgct |
6993324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University