View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_20 (Length: 250)
Name: NF1896_low_20
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12070008 - 12070214
Alignment:
| Q |
1 |
taaaacatctgcacactgtctatcaatcataattgtcagatccttaaacatatttgacttcaaccataaatggttcaatggtcaattatatgattgatat |
100 |
Q |
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| T |
12070008 |
taaaacatttgcacactgtctatcaatcataattgtcacatccttaaacatatttgacttgaaccataaatggttcaatggtcaattatatgatt----- |
12070102 |
T |
|
| Q |
101 |
gattttgaattcaaatgtga-ggtgattagatttttcaacattaaattagcggccatgtcatgtaccagccaaatcaaaaagtaaaacaagagcagtgct |
199 |
Q |
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| T |
12070103 |
----ttgaattcaaatgtgaaggtgattagatttttcaacattaaattagtggccatgacatgtacaagccaaataaaaaagtaaaacaagatcagcgct |
12070198 |
T |
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| Q |
200 |
gcacaatctaaattca |
215 |
Q |
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| T |
12070199 |
gcacaatctaaattca |
12070214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 12890062 - 12890135
Alignment:
| Q |
119 |
gaggtgattaga--tttttcaacattaaattagcggccatgtcatgtaccagccaaatcaaaaagtaaaacaaga |
191 |
Q |
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| T |
12890062 |
gaggtgattagatttttttcaacatttaattagcag-catgtcatgcaccagccaattcaaaaagcaaaacaaga |
12890135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 14637951 - 14638019
Alignment:
| Q |
123 |
tgattagatttttcaacattaaattagcggccatgtcatgtaccagccaaatcaaaaagtaaaacaaga |
191 |
Q |
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| T |
14637951 |
tgattagattttacaacatttaattagcagcaatgacatgcaccacccaattcgaaaagaaaaacaaga |
14638019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 36374136 - 36374044
Alignment:
| Q |
1 |
taaaacatctgcacactgtctatcaatcataattgtcagatccttaaacatatttgacttcaaccataaatggttcaatggtcaattatatga |
93 |
Q |
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|||||| |||| |||||| |||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
36374136 |
taaaacttctgtacactgcctataaatcataactgtcatatcattaaacatatttgacttcaaccataaatggttcaactgtcaatcatatga |
36374044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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