View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_24 (Length: 238)
Name: NF1896_low_24
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37012787 - 37012567
Alignment:
| Q |
1 |
tgtcctccaaagcatgaagcacaagtgggatagaataaaaagacacacatttgtggcttgagtaatttcctaagtgatttgttcaatggttatggagaac |
100 |
Q |
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| T |
37012787 |
tgtcctccaaagcatgaagcacaagtgggatagaataaaaagacacacatttgtggcttgagtaatttcctaagtgatttgttcaatggttatggagaac |
37012688 |
T |
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| Q |
101 |
aaaacttctctccctctctatgaaaaaatatggatcaaacacacattttcaagagttatggattccttcacattgctcctcctcttcttacttcttgcct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37012687 |
aaaacttctctccctctctatgaaaaaatatgggtcaaacacacattttcaagagttatggattccttcacattgctcctcctcttcttacttcttgctt |
37012588 |
T |
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| Q |
201 |
atcgtgtttcttcctacaata |
221 |
Q |
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||||||||||||||||||||| |
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| T |
37012587 |
atcgtgtttcttcctacaata |
37012567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 37028566 - 37028491
Alignment:
| Q |
108 |
ctctccctctctatgaaaaaatatggatcaaacacacattttcaagagttatggattccttcacattgctcctcct |
183 |
Q |
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|||||||||||||||| ||| | | | | ||| |||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
37028566 |
ctctccctctctatgataaatttttgttgaaatacacattttcaagagtgatggattccttcactttgctcttcct |
37028491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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