View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_4 (Length: 473)
Name: NF1896_low_4
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 44824717 - 44824269
Alignment:
| Q |
18 |
aatcttgccagttttcatgaatgtcataatttcattgttacatttcaccaaatttttatggtacacaaaatttgaagctagtcttgcttcgcattaaggt |
117 |
Q |
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| T |
44824717 |
aatcttgccagttttcatgaatgtcataatttcattgttacatttcaccaaatttttatggtacacaaaatttgaagctagtcttgcttcgcattaaggt |
44824618 |
T |
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| Q |
118 |
tatctgcaattgcattatgctaagtgcatgaaatcattcattttcatgaactagtggaaattttcacaagctacgtatacacagttgcagaataaaaaat |
217 |
Q |
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| T |
44824617 |
tatctgcaattgcattatgctaagtgcatgaaatcattcattttcatgaactagtggaaattttcacaagctacgtatacacagttgcagaataaaaaat |
44824518 |
T |
|
| Q |
218 |
gaatagggtgctatttgaaaagttcaccctcgtctattttgtaagtgaaaaaataacaactcattccatacatctggaacccctggaagacaccaatgac |
317 |
Q |
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| T |
44824517 |
gaatagggtgctatttgaaaagttcaccctcgtctattttgtaagtgaaaaaataacaactcattccatacatctggaacccctggaagacaccaatgac |
44824418 |
T |
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| Q |
318 |
tacaatcttgaattcttgaggattgtgtttttctcccataaatggatgggtgaccatctatcctaaattctgacaaactagttatattcaaccatgtcac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824417 |
tacaatcttgaattcttgaggattgtgtttttctcccataaatggatgggtgaccatctatcctaaattctgacaaactagttatattcaaccatgtcac |
44824318 |
T |
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| Q |
418 |
gggagttttcatctgctttactgtctcttctatgattatattcatctca |
466 |
Q |
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| T |
44824317 |
gggagttttcatctgctttactgtctcttctatgattatattcttctca |
44824269 |
T |
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