View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_5 (Length: 445)
Name: NF1896_low_5
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 116 - 275
Target Start/End: Complemental strand, 2505349 - 2505190
Alignment:
| Q |
116 |
ataaacttaggatagtctttcaccttagttcatccatcaaatatcaaaaagttaaaagttatgtaatcaatttaaatgtcactcctcattaactatcaat |
215 |
Q |
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| T |
2505349 |
ataaactaaggataatctttcaccttagttaatccatcaaatatcaaaaagttaaaagttatgtaatcaatttaaatgtcactcctcattaactatcaat |
2505250 |
T |
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| Q |
216 |
atgtcgacacatctttaacactcatagatgtgtttaacgagtatccaagggaaaggtgtg |
275 |
Q |
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| T |
2505249 |
atgtggacacatctttaacactcatagatgtgtttaacgagtatccaagggaaaggtgtg |
2505190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 2505633 - 2505531
Alignment:
| Q |
19 |
aatgagtattttatttataaaagatctaaattaagagttacagtatataagtgcatctaagttgcacaatttcttttagtaggaaaaaatagtcgaaata |
118 |
Q |
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| T |
2505633 |
aatgagtattttatttataaaagatctaaattaagagttacaatatataagtgcatctaagttgcacaattt-ttttaataggaaaaaatagttgaaata |
2505535 |
T |
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| Q |
119 |
aact |
122 |
Q |
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|||| |
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| T |
2505534 |
aact |
2505531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 7330104 - 7330222
Alignment:
| Q |
26 |
attttatttataaaagatctaaattaagagttacagtatataagtgcatctaagttgcacaatttcttttagtaggaaaaaa--tagtcgaaataaactt |
123 |
Q |
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| T |
7330104 |
attttatttataaaagatctaaattaagagttataatatatatgagcatctaaattgcacaatttcttttaatagaaaaaaaattagtctaaataaagtt |
7330203 |
T |
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| Q |
124 |
aggatagtctttcacctta |
142 |
Q |
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| T |
7330204 |
aggatagtctttctcctta |
7330222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 7330252 - 7330322
Alignment:
| Q |
206 |
aactatcaatatgtcgacacatcttt-aacactcatagatgtgtttaacgagtatccaagggaaaggtgtg |
275 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| | |||||||| |
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| T |
7330252 |
aactatcaatatgtcgacacatcttttaacattcatagatgtgtttaacaagtatccaagagcaaggtgtg |
7330322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 2505167 - 2505130
Alignment:
| Q |
304 |
gttgttttgaacaattatctaaactgtcagacttacga |
341 |
Q |
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| T |
2505167 |
gttgttttgaacaattgtctaaactgtcagacttacga |
2505130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 2505041 - 2505013
Alignment:
| Q |
380 |
catgccccatgggaacacattggtaccac |
408 |
Q |
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| T |
2505041 |
catgccccatgggaacacattggtaccac |
2505013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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