View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1896_low_6 (Length: 426)
Name: NF1896_low_6
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1896_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 2693246 - 2692849
Alignment:
| Q |
11 |
cagagacgaagatggtgaagttttattctcagatgggcacaacttcgtaatgggtttctttggttttcaagactcttcttctcgttatgttggaatttgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2693246 |
cagagacgaagatggtgaagttttattctcagatgggcacaacttcgtaatgggtttctttggttttcaagactcttcttctcgttatgttggaatttgg |
2693147 |
T |
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| Q |
111 |
tactacaacattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaatgggaatggtggttcttttactataacagaaaacggtaatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2693146 |
tactacaacattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaatggcaatggtggttcttttactataacagaaaacggtaatt |
2693047 |
T |
|
| Q |
211 |
tagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtttctagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatgg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2693046 |
tagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtttccagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatgg |
2692947 |
T |
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| Q |
311 |
taatcttgttctttcaaatgataatgtggtgttatgggaaagctttaagcatccaagtgatacttatgtacctggtatgaaagttcctgtgaatggga |
408 |
Q |
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| T |
2692946 |
taatcttgttctttcaaatgataatgtggtgttatgggaaagctttaagcatccaagtgatacttatgtacctggtatgaaagttcctgtgaatggga |
2692849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 2700948 - 2700551
Alignment:
| Q |
11 |
cagagacgaagatggtgaagttttattctcagatgggcacaacttcgtaatgggtttctttggttttcaagactcttcttctcgttatgttggaatttgg |
110 |
Q |
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||||||| |||| |||||||||||| |||||||||| |||||||||| |||||||||||||| ||| || | |||||||| ||||| ||||| |||||| |
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| T |
2700948 |
cagagacaaagaaggtgaagttttagtctcagatggctacaacttcgtgatgggtttctttgggtttgaaaattcttcttcacgttacgttggtatttgg |
2700849 |
T |
|
| Q |
111 |
tactacaacattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaatgggaatggtggttcttttactataacagaaaacggtaatt |
210 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| || |||||||| || ||| || || |||||| || | |
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| T |
2700848 |
tactacaacattcctggacccgaagttatttgggttgcaaacagaaacaaacccatcaatggaaacggtggttccttcactgtatcaacaaacggaaact |
2700749 |
T |
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| Q |
211 |
tagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtttctagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatgg |
310 |
Q |
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||||||||||||||| ||||||||||||||| ||||| ||||||||||||| | | | || ||||| ||||||| | |||||| || || |||||||||| |
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| T |
2700748 |
tagttatccttgatggaaacaaaaaccaactttggtcaaccaatgtttctatcatccaaaccaataagaataactcggaagctgttcttcgagatgatgg |
2700649 |
T |
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| Q |
311 |
taatcttgttctttcaaatgataatgtggtgttatgggaaagctttaagcatccaagtgatacttatgtacctggtatgaaagttcctgtgaatggga |
408 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
2700648 |
taatcttgttctttcaaatgagaaagtggtgttatgggaaagctttgagaatccaagcgatacttatgtacctggtatgaaagttcctgttaatggga |
2700551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 14522315 - 14521926
Alignment:
| Q |
19 |
aagatggtgaagttttattctcagatgggcacaacttcgtaatgggtttctttggttttcaagactcttcttctcgttatgttggaatttggtactacaa |
118 |
Q |
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|||| ||||| ||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||| || ||||||||||| || |
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| T |
14522315 |
aagaaggtgatgttttattctcagatggtttcaactttgctatgggtttctttggtttcggcaactcttcttctcgttatgtcggtatttggtactataa |
14522216 |
T |
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| Q |
119 |
cattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaatgggaatggtggttcttttactataacagaaaacggtaatttagttatc |
218 |
Q |
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||| ||||| || | |||||||||||||||| |||||||||||||| ||||| || |||||||||| ||| || | ||||| |||||||| |||||| |
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| T |
14522215 |
catacctggaccgcagattatttgggttgcaaatagaaacacacccataaatggcaaccgtggttctttcactgtagcggaaaatggtaatttggttatc |
14522116 |
T |
|
| Q |
219 |
cttgatgaaaacaaaaaccaactatggtctaccaatgtttctagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatggtaatcttg |
318 |
Q |
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||||||||||||||||||||| ||||||| || |||||||||| | || |||||||| | ||||| ||||||| || ||||||||||||||||||||| |
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| T |
14522115 |
cttgatgaaaacaaaaaccaaatatggtcgacaaatgtttctatcagtcaaaacaatacggataactatgaagctgttcttagagatgatggtaatcttg |
14522016 |
T |
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| Q |
319 |
ttctttcaaatgataatgtggtgttatgggaaagctttaagcatccaagtgatacttatgtacctggtatgaaagttcctgtgaatggga |
408 |
Q |
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||||| | ||||| |||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14522015 |
ttcttgcgaatgagaatgcggtgttatgggaaagctttgagaatccatgtgatacttatgtacctggtatgaaagttcctgtgaatggga |
14521926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 31730783 - 31730853
Alignment:
| Q |
100 |
ttggaatttggtactacaacattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaat |
170 |
Q |
| |
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|||| ||||||||| | |||||||||| || | || || ||||||||||||||||||||| ||||||||| |
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| T |
31730783 |
ttggtatttggtacaaaaacattcctgttcaaaaatttgtttgggttgcaaacagaaacaatcccatcaat |
31730853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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