View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1896_low_9 (Length: 402)

Name: NF1896_low_9
Description: NF1896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1896_low_9
NF1896_low_9
[»] chr7 (2 HSPs)
chr7 (8-378)||(26281867-26282241)
chr7 (99-326)||(24805306-24805541)
[»] chr4 (2 HSPs)
chr4 (96-326)||(1774797-1775036)
chr4 (18-100)||(1775146-1775228)
[»] chr8 (2 HSPs)
chr8 (99-326)||(16239307-16239542)
chr8 (18-100)||(16239655-16239737)
[»] chr6 (1 HSPs)
chr6 (99-326)||(1708607-1708842)
[»] chr5 (2 HSPs)
chr5 (99-326)||(15275585-15275820)
chr5 (18-100)||(15275933-15276015)
[»] chr3 (4 HSPs)
chr3 (99-326)||(18151197-18151432)
chr3 (99-228)||(12413296-12413432)
chr3 (18-100)||(18151545-18151627)
chr3 (18-91)||(12413554-12413627)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 26282241 - 26281867
Alignment:
Q  8 tagcaaaggcagaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaaatcttgt 107  Q
    ||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26282241 tagcagaggcagaaaattcaaaaaaatttcaaatcactggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaaatcttgt 26282142  T
Q  108 tgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatgaaatgttatatttcaagttcaagaatgtttta 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26282141 tgatgtgcttcaaatgcgattttctgaagatccacaaattaatgttgttttacaggctgtagcatatgaaatgttatatttcaacttcaagaatgtttta 26282042  T
Q  208 caaga----aaatgaaatgcactttattggcataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaacaaactacaagtgacac 303  Q
    |||||    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26282041 caagaaattaaatgaaatacactttattcgcataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaacaaactacaagtgacac 26281942  T
Q  304 tgattcactactcttttaaggtacggtcatgttggacatgatttcattttgttttgatttcttctcataattgtc 378  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26281941 tgattcactactcgtttaaggtacggtcatgttggacatgattttattttgttttgatttcttctcataattgtc 26281867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 99 - 326
Target Start/End: Original strand, 24805306 - 24805541
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  24805306 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 24805405  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaacaaa 290  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  24805406 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatcaacaaa 24805505  T
Q  291 ctacaagtgacactgattcactactcttttaaggta 326  Q
    ||||||||| ||||| |||||| | |||||||||||    
T  24805506 ctacaagtggcactggttcactgcacttttaaggta 24805541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 96 - 326
Target Start/End: Complemental strand, 1775036 - 1774797
Alignment:
Q  96 tgaaaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatattt 188  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| |||    
T  1775036 tgaaaatcttgttgttgtgcttcaaatgcgattttctgatgatccacaaattaatgatgtcttacaggctgtagctcaagaggtaataaatcttattttt 1774937  T
Q  189 caagttcaagaatgttttacaagaaaatgaaatgcactttattggca--taggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaa 286  Q
    ||| |||||||||||||| ||||||||| |||| || ||| ||  ||  ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  1774936 caacttcaagaatgtttttcaagaaaataaaatacatttttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatcaa 1774837  T
Q  287 caaactacaagtgacactgattcactactcttttaaggta 326  Q
    ||||||||||||| ||||| |||||| | |||||||||||    
T  1774836 caaactacaagtggcactggttcactgcacttttaaggta 1774797  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 1775228 - 1775146
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| | |||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  1775228 agaaaattcagaaaattctcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 1775146  T

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Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 16239542 - 16239307
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||  | ||       ||| |||| ||||||    
T  16239542 aaatcttgttgttgtgcttcaaatgcgattttctgatgatccacaaattaatgttgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 16239443  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaacaaa 290  Q
     |||||||||||||| |||| |||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  16239442 cttcaagaatgtttttcaagtaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatcaacaaa 16239343  T
Q  291 ctacaagtgacactgattcactactcttttaaggta 326  Q
    ||||||||| ||||| |||||| | |||||||||||    
T  16239342 ctacaagtggcactggttcactgcacttttaaggta 16239307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 16239737 - 16239655
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| |||||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  16239737 agaaaattcagaaaattttcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 16239655  T

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Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 99 - 326
Target Start/End: Original strand, 1708607 - 1708842
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  1708607 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 1708706  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaacaaa 290  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  1708707 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatcaacaaa 1708806  T
Q  291 ctacaagtgacactgattcactactcttttaaggta 326  Q
    ||||||||| ||||| |||||| | |||||||||||    
T  1708807 ctacaagtggcactggttcactgcacttttaaggta 1708842  T

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Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 15275820 - 15275585
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  15275820 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 15275721  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaacaaa 290  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  15275720 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatcaacaaa 15275621  T
Q  291 ctacaagtgacactgattcactactcttttaaggta 326  Q
    ||||||||| ||||| |||||| | |||||||||||    
T  15275620 ctacaagtggcactggttcactgcacttttaaggta 15275585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 15276015 - 15275933
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| |||||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  15276015 agaaaattcagaaaattttcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 15275933  T

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Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 18151432 - 18151197
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  18151432 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 18151333  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatcaacaaa 290  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  18151332 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatcaacaaa 18151233  T
Q  291 ctacaagtgacactgattcactactcttttaaggta 326  Q
    ||||||||| ||||| |||||| | |||||||||||    
T  18151232 ctacaagtggcactggttcactgcacttttaaggta 18151197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 12413432 - 12413296
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagc-------atatgaaatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||        || ||||| |||| ||||||    
T  12413432 aaatcttgttgttgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaagaaatcttatttttcaa 12413333  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcacttt 228  Q
     |||||||||||||| ||||||||| |||| ||||||    
T  12413332 cttcaagaatgtttttcaagaaaataaaatacacttt 12413296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 18151627 - 18151545
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| |||||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  18151627 agaaaattcagaaaattttcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 18151545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 12413627 - 12413554
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaag 91  Q
    ||||||||||||||| |||||  |||| |  |||||||| ||||||| |||||||||||||| |||||||||||    
T  12413627 agaaaattcagaaaattttcacgtcactgaagattctacaaattggacgaatgatacatactcaaaagtgaaag 12413554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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