View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18970_high_2 (Length: 436)
Name: NF18970_high_2
Description: NF18970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18970_high_2 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 7989 - 8388
Alignment:
| Q |
10 |
attattctaaaagaggtgacagctatagagtagttaacagattnnnnnnnnntgtcttcagcaacaatagttggagaatggagtatttattatattaaac |
109 |
Q |
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| T |
7989 |
attattctaaaagaggtgacagctatagagtagttaacagat-aaaaaaaaatgtcttcagcaacaatagttggagaatggagtatttattatattaaac |
8087 |
T |
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| Q |
110 |
aaactttcaatattgttttggaacgtttacttctaatctgatacaaaatgaaagaagaaagcaaagtaacaataggtaatggaagaggttaatttgtgta |
209 |
Q |
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| T |
8088 |
aaactttcaatattgttttggaacgtttacttctaatctgatacaaaatgaaacaa-------------caataggtaatggaagaggttaatttgtgta |
8174 |
T |
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| Q |
210 |
tgagaatgagcatagttattgaagttcttgtg---gctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaagatc |
306 |
Q |
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| T |
8175 |
tgagaatgagcatagttattgaagttcttgtgatggctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaagatc |
8274 |
T |
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| Q |
307 |
actaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaacaa |
406 |
Q |
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| T |
8275 |
actaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaacaa |
8374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 205 - 420
Target Start/End: Original strand, 19205146 - 19205361
Alignment:
| Q |
205 |
gtgtatgagaatgagcatagttattgaagttcttgtggctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaaga |
304 |
Q |
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| T |
19205146 |
gtgtttgagaatgagcatagttgttgaagttatggttgctcttgtagcagttttggtggcactgatccattttttacatgttttagttttgagactaaga |
19205245 |
T |
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| Q |
305 |
tcactaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaac |
404 |
Q |
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||| ||||||||||||||||||| || |||||| |||| ||||||||| |||| ||||||||||| || ||||| |||||||| |||||||||||||||| |
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| T |
19205246 |
tcattaagagcaaagcttcatagacagggtattcatggaccttctcctgatttttactttggtaatattaaagagatgaagacacttttactccaacaac |
19205345 |
T |
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| Q |
405 |
aatcacaagtcaaaca |
420 |
Q |
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| T |
19205346 |
aaacacaagtcaaaca |
19205361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 212 - 406
Target Start/End: Original strand, 25191960 - 25192154
Alignment:
| Q |
212 |
agaatgagcatagttattgaagttcttgtggctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaagatcactaa |
311 |
Q |
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| T |
25191960 |
agaatgagcataagtgttgaagttgtggtggctcttgcagcagtattggttgcattgatccattttttgcaagttttggtttggagaccaaaatcattga |
25192059 |
T |
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| Q |
312 |
gagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaacaa |
406 |
Q |
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| T |
25192060 |
gagcaaagctacataggcagggtattcatggcccttctcctcacttttacttgggtaatatccaagaaatgaagacccttttacaccaacaacaa |
25192154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 1760372 - 1760492
Alignment:
| Q |
276 |
ttttgaatgttttgattttgagaccaagatcactaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaa |
375 |
Q |
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| T |
1760372 |
ttttgcatgtttttgttttgaagccaagatcccttagagctaagcttcaaaaacaaggaattgatggaccttctcctcacttctactttggcaacatctc |
1760471 |
T |
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| Q |
376 |
agaaatgaagacccttttact |
396 |
Q |
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||||||||||| ||||||||| |
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| T |
1760472 |
agaaatgaagagccttttact |
1760492 |
T |
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