View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18970_low_1 (Length: 1545)
Name: NF18970_low_1
Description: NF18970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18970_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 926 - 1527
Target Start/End: Complemental strand, 50588390 - 50587789
Alignment:
| Q |
926 |
aagcgtatacatatttatatgagtgtccaccaaatatatttcaaaaaataaccccacctccaagtaagcgggtgtatttaataacctgatcttcattgtt |
1025 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
50588390 |
aagcgtatacatatttatatgagtatccactaaatatgtttcaaaaaataaccccacctccaagtaagcaggtgtatttaataacccaatcttcattgtt |
50588291 |
T |
|
| Q |
1026 |
tgattttactttgttttttataggagaaaataaagttaataataacatgagtcaggtctaatggaagggttagacttttacaacctaaaccaagttcgat |
1125 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50588290 |
tgactttactttgttttttataggagaaaatagagttaataataacatgagtcaggtctaatggaagggttagacttttacaacctaaactaagttcgat |
50588191 |
T |
|
| Q |
1126 |
tctcgattgatatgattatccaaatttaaggtcctattcgattctaataaaattacctctagaggaggaacatataggagnnnnnnntgcagttaggaca |
1225 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
50588190 |
tctcgattgatatggttatccaaatttaaggtcctattcgattctaataaaattacctctagaggaggaacatataggagaaaaaaatgtagttaggaca |
50588091 |
T |
|
| Q |
1226 |
aaaatagaggtgtgaaattgtagcatatgtcattatttggaatattttttagatttcagttgttgcacccaagaggaatgcctcagaaaaacagcaaaac |
1325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50588090 |
aaaatagaggtgtgaaattgtagcatatgtcattatttggaatattttttagatttcagttgttgcacccaagaggaatgcctcagaaaaacagcaaaac |
50587991 |
T |
|
| Q |
1326 |
tatacagaactacgttatgaaattaatctagtctttgaattcattcgtttggtgtaatgtccaagtttcctattttgtgtagatcatgatagaaatttca |
1425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50587990 |
tatacagaactacgttatgaaattaatctagtctttgaattcattcttttggtgtaatgtccaagtttcctattttgtgtagatcatgatagaaatttca |
50587891 |
T |
|
| Q |
1426 |
agctataaaataatgtcttttcatatgctggtgttccttttgtaagttttcttgcaccatattatcagatatgttaggttagaaaatattaaaccccttt |
1525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50587890 |
agctataaaataatgtcttttcatatgctggtgttccttttgtaagttttcttgcaccatattatcagatatgttaggttagaaaatattaaaccccttt |
50587791 |
T |
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| Q |
1526 |
cc |
1527 |
Q |
| |
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|| |
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| T |
50587790 |
cc |
50587789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 433 - 861
Target Start/End: Complemental strand, 50588883 - 50588455
Alignment:
| Q |
433 |
ttttaacacttaaacaatcaatttcatatattaaaataaaaaacaacttcaaaacttttaatgtatataagagacccttttgaattatttttcctttaaa |
532 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
50588883 |
ttttaacacttaaacaatcaatttcataaattaaaataaaaaacaacttcaatacttttaatgtatataagagacccttttgaatgattttgcctttaaa |
50588784 |
T |
|
| Q |
533 |
atattattttttcacaaaagaccgcaaagaaaccagattattagtccaattgataaaagattatcgtgtactttgcaaaaatattggttcaactctcgtt |
632 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||| ||||||||| |
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| T |
50588783 |
atattaatttttcacaaaagaccgcaaagaaactagattattagttcaattgataaaagattgtcgtgtcctttccaaaaatattggttcgactctcgtt |
50588684 |
T |
|
| Q |
633 |
gtcaatataaaaacctcgttgttgattaatctaaaaatacttttgtgagagcccttgaggtctttgagattcaactttcctaaactttgtataaccaaaa |
732 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50588683 |
gtcaatataaaaaccttgttgttgattaatctaaaaatacttttgtgagagcacttgaggtctttgagattcaactttcctaaactttgtataaccaaaa |
50588584 |
T |
|
| Q |
733 |
gaatatgtaccacaaaggagtgcttaaaaaagattgtgcagatgtgtcaaatgtgaaaacatgggagtataagataaaaataaaaacaataataatattt |
832 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50588583 |
gaatatgtaccacaaaggagtgcttaaaaatgattgtgcagatgtgtcaaatgtaaaaacatgggagtataagataaaaataaaaacaataataatattt |
50588484 |
T |
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| Q |
833 |
caacaactttaacactcattcaacatctc |
861 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
50588483 |
caacaactttaacactcattcaacatctc |
50588455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 191 - 445
Target Start/End: Complemental strand, 50589176 - 50588931
Alignment:
| Q |
191 |
gttacctggcaatagtagcaagcaacagaaggattcgaaattcttcaaaaacttatattgaacgaaggggtagcagactagcagttctaacggcgacgca |
290 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50589176 |
gttacctggcaatagtagcaa----cagaaggattcggaattcttcaaaaacttatattgaacgaaggggtagcagactagcagttctaacggcgacgca |
50589081 |
T |
|
| Q |
291 |
gaagggagggagggaaaggaaaggaacgcgaacagagtaataaatatgtttgggctaatcttgttgtattgggcctccaatctaacttattgtaaagtga |
390 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
50589080 |
gaagggagggagggaaaggaa-----cgcgaacagagtaataaatatgtttgggctaatcttgttgtattgggcctccaatctaactttgtgtcaagtga |
50588986 |
T |
|
| Q |
391 |
catttggtaattgctatataaaccccctccgattatttaaacttttaacacttaa |
445 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
50588985 |
catttggtaattgctatataaaccccctcagattatttaaacttttaatacttaa |
50588931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 4e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 4e-57
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 43751402 - 43751285
Alignment:
| Q |
19 |
ccaagttctcccattatccaagacttgaaggacgataacgctttgtttttccttcaaatacttttgttcaaaatctactgggatatactagtaaataatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43751402 |
ccaagttctcccattatccaagacttgaaggacgataacgctttgtttttccttcatatacttttgttcaaaatctactgggatatactagtaaataatt |
43751303 |
T |
|
| Q |
119 |
aagatgtatatcaacttg |
136 |
Q |
| |
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|||||||||||||||||| |
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| T |
43751302 |
aagatgtatatcaacttg |
43751285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 49164954 - 49164885
Alignment:
| Q |
23 |
gttctcccattatccaagacttgaaggacgataacgctttgtttttccttcaaatacttttgttcaaaat |
92 |
Q |
| |
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|||||| ||| ||||||||| |||||| |||| ||||||| | |||||||||||||||||||||||||| |
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| T |
49164954 |
gttctctcatcatccaagacctgaagggcgatttcgctttgctgttccttcaaatacttttgttcaaaat |
49164885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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