View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18971_high_4 (Length: 386)
Name: NF18971_high_4
Description: NF18971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18971_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 43195143 - 43195512
Alignment:
| Q |
15 |
aagaaatgagatggtgcccaaccttgaaatgtgaaggtttaaatgatcacagatcaacaaagctccagaaggcaaacacactcgatatgaggtgtgtgtg |
114 |
Q |
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| T |
43195143 |
aagaaatgagatggtgcccaaccttgaaatgtgaaggtttaaatgatcacagatcaacaaagctccaaaaggcaaacacactcgatatgaggtgtgtgtg |
43195242 |
T |
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| Q |
115 |
ggaacatgtcaactggctgtaggcttattagcttataacatccttctatattcagctctgcctgcagaaaaccttcaacaactcaaataggaatctcaaa |
214 |
Q |
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| T |
43195243 |
ggaacatgtcaactggctgtaggcttattagcttataacatccttctatattcagctctgcctgcagaaaaccttcaacaactcaaataggaatctcaaa |
43195342 |
T |
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| Q |
215 |
aatataaaggaaaaacacaataaaatgacacataccacaccatgacagagataatcaaggtcacgtgcacatgtagcaggattgcatgacatatacacta |
314 |
Q |
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| T |
43195343 |
aatataaaggaaaaacacaataaaatgacacataccacaccatgacagagataatcaaggtcacgtgcacatgtagcaggattgcatgacacatacacta |
43195442 |
T |
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| Q |
315 |
tgcgaggtaccctaagatttaacaggaacttgatcagcttcatgtgcattcctgggcggttgggatctgt |
384 |
Q |
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| T |
43195443 |
tgcgaggcgccctaagatttaacaggaacttgatcagcttcatgtgcattcctgggcggttgggatctgt |
43195512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 35082709 - 35082843
Alignment:
| Q |
18 |
aaatgagatggtgcccaaccttgaaatgtgaaggtttaaatgatcacagatcaacaaagctccagaaggcaaacacactcgatatgaggtgtgtgtggga |
117 |
Q |
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| T |
35082709 |
aaatgaaatcgtgcccaaccttaaaatggaaaggttttaatgatcacaaataaacaaagctccagaaggcaaacacactcagtatgaggtgtgagtggga |
35082808 |
T |
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| Q |
118 |
acatgtcaactggctgtaggcttattagcttataa |
152 |
Q |
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| T |
35082809 |
acatgtcaactggttgtaggcttattagcttataa |
35082843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 35082840 - 35082902
Alignment:
| Q |
265 |
ataatcaaggtcacgtgcacatgtagcaggattgcatgacatatacactatgcgaggtacccta |
328 |
Q |
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| T |
35082840 |
ataatcaacgtcccgtgcacat-tggcaggattgcatgacacatgcactatgcgaggtgcccta |
35082902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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