View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18971_low_3 (Length: 449)

Name: NF18971_low_3
Description: NF18971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18971_low_3
NF18971_low_3
[»] chr8 (6 HSPs)
chr8 (179-431)||(14029315-14029585)
chr8 (17-134)||(14033632-14033748)
chr8 (264-433)||(21244962-21245131)
chr8 (264-433)||(27682328-27682497)
chr8 (264-433)||(37206996-37207165)
chr8 (284-321)||(10737593-10737630)
[»] chr4 (9 HSPs)
chr4 (285-433)||(12438070-12438218)
chr4 (159-253)||(18176290-18176384)
chr4 (264-433)||(12431586-12431755)
chr4 (264-433)||(42408393-42408562)
chr4 (264-433)||(48304114-48304283)
chr4 (264-433)||(29330951-29331120)
chr4 (264-433)||(913549-913717)
chr4 (65-134)||(18176233-18176302)
chr4 (264-371)||(13756069-13756176)
[»] chr3 (3 HSPs)
chr3 (159-253)||(13217710-13217804)
chr3 (40-134)||(13217792-13217886)
chr3 (264-433)||(2980939-2981108)
[»] chr6 (2 HSPs)
chr6 (264-433)||(23424768-23424937)
chr6 (264-375)||(18774594-18774705)
[»] chr1 (2 HSPs)
chr1 (264-433)||(28516560-28516729)
chr1 (264-433)||(38988387-38988556)
[»] scaffold0002 (2 HSPs)
scaffold0002 (159-240)||(293600-293681)
scaffold0002 (65-134)||(293669-293738)
[»] chr7 (3 HSPs)
chr7 (264-375)||(29182869-29182980)
chr7 (264-407)||(1492062-1492204)
chr7 (44-134)||(18045077-18045167)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 9e-77; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 179 - 431
Target Start/End: Complemental strand, 14029585 - 14029315
Alignment:
Q  179 gaattgtaaatgcatgaatatggtgtaccaagaaagttgtatttcgtaatggaataggtaacaaaa-------------------ctactttgctcacat 259  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||                   |||||||||||||||    
T  14029585 gaattgtaaatgtatgaatatggtgtaccaagaaagttgtatttcgtaatggaatagttaacaaaaaactagaacacctttaggactactttgctcacat 14029486  T
Q  260 aaaccaccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcat 359  Q
    || | ||| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  14029485 aaccaaccccacatccgaaaactgttagataagaaatattaggtttttcaccaaaaaccaatttgaaagaggaaaccttgtgacaactagttggcctcat 14029386  T
Q  360 gagaatcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaag 431  Q
    ||||||||||||||||  |||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||    
T  14029385 gagaatcaatgttgcagcaagcataattgcatgtcc-caactggaaattgggaggttgcatcttattagaag 14029315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 14033748 - 14033632
Alignment:
Q  17 aatatttatggatgtgtaaccaagtccatcacaacgtaaccaaaaattaagatttactttattcggtatcaattgtgaactacagtcaaatagaacacct 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||  |||||||||||| ||||| |||||||||||| |     
T  14033748 aatatttatggatgtgtaaccaagtccatcacaaggtaaccaaaaactaagatttagtttattctttatcaattgtgagctacaatcaaatagaaca-ca 14033650  T
Q  117 tttaggagtatcaatacc 134  Q
    ||||||||||||||||||    
T  14033649 tttaggagtatcaatacc 14033632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 433
Target Start/End: Complemental strand, 21245131 - 21244962
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| ||||||  |||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||| ||| ||    
T  21245131 caccgcacatccaaaaattcgtagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataacttgttggcctgatgcga 21245032  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| |||| ||| || |||||||    
T  21245031 atcaatgttgcagcatgcaaaattgcatgtccccaagtggaaattgggagtttgcttctcatgagaagtg 21244962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 433
Target Start/End: Original strand, 27682328 - 27682497
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  27682328 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 27682427  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  27682428 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 27682497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 433
Target Start/End: Complemental strand, 37207165 - 37206996
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  37207165 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 37207066  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  37207065 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 37206996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 10737630 - 10737593
Alignment:
Q  284 ttagatgagaaatattaggtttttcaccaaaacccaat 321  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  10737630 ttagatgagaaatattaggtttttaaccaaaaaccaat 10737593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 433
Target Start/End: Original strand, 12438070 - 12438218
Alignment:
Q  285 tagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgagaatcaatgttgcaataagcata 384  Q
    |||||| ||||||||||||| || ||||||| ||||||| ||||||||||  |  ||| |||| |||||||| ||| ||||||||||||||  | ||| |    
T  12438070 tagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaaaagtcatgataacttgttggcctgatgcgaatcaatgttgcagcatgcaaa 12438169  T
Q  385 attgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||| ||||||||||| ||||| |||| ||| || |||||||    
T  12438170 attgcatgtccccaagtggaaattgggagtttgcttctcatgagaagtg 12438218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 18176290 - 18176384
Alignment:
Q  159 gagtatcaataccgttatatgaattgtaaatgcatgaatatggtgtaccaagaaagttgtatttcgtaatggaataggtaacaaaactactttgc 253  Q
    ||||||||||||||| |  ||||||||||||||||||||||| |||||||| |||  || | ||| ||||||||||||||||||| |||||||||    
T  18176290 gagtatcaataccgtcacgtgaattgtaaatgcatgaatatgatgtaccaaaaaatctgcagttcctaatggaataggtaacaaagctactttgc 18176384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 433
Target Start/End: Original strand, 12431586 - 12431755
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  12431586 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 12431685  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  12431686 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 12431755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 433
Target Start/End: Complemental strand, 42408562 - 42408393
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  42408562 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 42408463  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  42408462 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 42408393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 433
Target Start/End: Original strand, 48304114 - 48304283
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  48304114 caccgcacatccaaatattcgaagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccagatgcga 48304213  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||| ||||||| ||||| |||||||| || |||||||    
T  48304214 atcaatgttgcagcatgcagaattgcatgtccccaaatggaaattgggagtttgcatctcatgagaagtg 48304283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 433
Target Start/End: Complemental strand, 29331120 - 29330951
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  29331120 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 29331021  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    |||||||||| |  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  29331020 atcaatgttgtagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 29330951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 433
Target Start/End: Original strand, 913549 - 913717
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||| | |  |  ||| |||| |||||||  ||| ||    
T  913549 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaagggaagag-tcatgataactggttggccggatgcga 913647  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  913648 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 913717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 18176233 - 18176302
Alignment:
Q  65 aagatttactttattcggtatcaattgtgaactacagtcaaatagaacaccttttaggagtatcaatacc 134  Q
    ||||||| |||||| |||||||||| |||| ||||   |||||||||| |||||||||||||||||||||    
T  18176233 aagatttgctttatccggtatcaatcgtgagctacgagcaaatagaactccttttaggagtatcaatacc 18176302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 371
Target Start/End: Original strand, 13756069 - 13756176
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| |||||| |||||||  |||||||||| | || ||||||| |||| || || || || |  |||||| ||||||| ||||| ||| ||    
T  13756069 caccgcacatccaaaaattcttagatggaaaatattaggatcttgaccaaaaaccaactttaagggagagaagttgtgataactagtcggcctgatgcga 13756168  T
Q  364 atcaatgt 371  Q
    ||||||||    
T  13756169 atcaatgt 13756176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 13217804 - 13217710
Alignment:
Q  159 gagtatcaataccgttatatgaattgtaaatgcatgaatatggtgtaccaagaaagttgtatttcgtaatggaataggtaacaaaactactttgc 253  Q
    ||||||||||||||| |  ||||||||||||||||||||||| |||||||| |||  || | ||| ||||||||||||||||||| |||||||||    
T  13217804 gagtatcaataccgtcacgtgaattgtaaatgcatgaatatgatgtaccaaaaaatctgcagttcctaatggaataggtaacaaagctactttgc 13217710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 13217886 - 13217792
Alignment:
Q  40 gtccatcacaacgtaaccaaaaattaagatttactttattcggtatcaattgtgaactacagtcaaatagaacaccttttaggagtatcaatacc 134  Q
    ||||||||||| | |||| ||||  ||||||| |||||| |||||||||| |||| ||||   |||||||||| |||||||||||||||||||||    
T  13217886 gtccatcacaagggaaccgaaaaccaagatttgctttatccggtatcaatcgtgagctacgagcaaatagaactccttttaggagtatcaatacc 13217792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 433
Target Start/End: Original strand, 2980939 - 2981108
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| ||||||  |||||| |||||| |||||| || ||||||| ||||||| |||||||||   |  ||  || | |||||||| ||| ||    
T  2980939 caccgcacatccaaaaattcgtagatgggaaatactaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgctaaattgttggcctgatgcga 2981038  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||| ||  |  || |||||| ||||| ||||||||||| ||||| |||| ||| || |||||||    
T  2981039 atcaatgttccagcatacaaaattgcttgtccccaagtggaaattgggagtttgcttctcatgagaagtg 2981108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 433
Target Start/End: Complemental strand, 23424937 - 23424768
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  23424937 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 23424838  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  23424837 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 23424768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 18774594 - 18774705
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||| ||||||| |||||| ||||||| |||||||||| ||||| |||||||| |||||| |||||||||   |  ||| |||| |||||||| ||| ||    
T  18774594 caccacacatccaaaaattcttagatgggaaatattagatttttgaccaaaactcaatttcaaaggggaagagtcatgataactggttggcctgatgcga 18774693  T
Q  364 atcaatgttgca 375  Q
    ||||||||||||    
T  18774694 atcaatgttgca 18774705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 433
Target Start/End: Complemental strand, 28516729 - 28516560
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   ||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  28516729 caccgcacatccaaatattcgcagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 28516630  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  28516629 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 28516560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 433
Target Start/End: Complemental strand, 38988556 - 38988387
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| || |||   |||||  |||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||||  ||| ||    
T  38988556 caccgcacatccaaatattcgcagatggaaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataactggttggccggatgcga 38988457  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaatggggagattgcatcttattagaagtg 433  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||| ||||| || ||||| || |||||||    
T  38988456 atcaatgttgcagcatgcagaattgcatgtccccaagtggaaattgggagtttacatctcatgagaagtg 38988387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 293681 - 293600
Alignment:
Q  159 gagtatcaataccgttatatgaattgtaaatgcatgaatatggtgtaccaagaaagttgtatttcgtaatggaataggtaac 240  Q
    ||||||||||||||| |  ||||||||||||||||||||||| |||||||| |||  || | ||| ||||||||||||||||    
T  293681 gagtatcaataccgtcacgtgaattgtaaatgcatgaatatgatgtaccaaaaaatctgcagttcctaatggaataggtaac 293600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 293738 - 293669
Alignment:
Q  65 aagatttactttattcggtatcaattgtgaactacagtcaaatagaacaccttttaggagtatcaatacc 134  Q
    ||||||| |||||| |||||||||| |||| ||||   |||||||||| |||||||||||||||||||||    
T  293738 aagatttgctttatccggtatcaatcgtgagctacgagcaaatagaactccttttaggagtatcaatacc 293669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 375
Target Start/End: Complemental strand, 29182980 - 29182869
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| ||||||  |||||| ||||||||||||| || ||||||| ||||||| |||||||||   |  ||| |||| |||||| | ||| ||    
T  29182980 caccgcacatccaaaaattcgtagatgggaaatattaggttcttgaccaaaaaccaatttcaaaggggaagagtcatgataacttgttggcttgatgcga 29182881  T
Q  364 atcaatgttgca 375  Q
    ||||||||||||    
T  29182880 atcaatgttgca 29182869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 407
Target Start/End: Complemental strand, 1492204 - 1492062
Alignment:
Q  264 caccgcacatccgaaaattgttagatgagaaatattaggtttttcaccaaaacccaatttgaaaggggaaaccttgtgacaactagttggcctcatgaga 363  Q
    |||||||||||| |||||| ||||||| ||||||||||||| || || | ||  |||||| ||| |||||   |||||| ||||| ||||||| ||| ||    
T  1492204 caccgcacatcc-aaaattcttagatgggaaatattaggttattgactataaatcaatttcaaatgggaagatttgtgataactacttggcctgatgcga 1492106  T
Q  364 atcaatgttgcaataagcataattgcatgtcctcaagtggaaat 407  Q
    ||||||| ||  | |  || |||||||||||| |||||||||||    
T  1492105 atcaatgctgtgacatacagaattgcatgtccccaagtggaaat 1492062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 18045077 - 18045167
Alignment:
Q  44 atcacaacgtaaccaaaaattaagatttactttattcggtatcaattgtgaactacagtcaaatagaacaccttttaggagtatcaatacc 134  Q
    ||||||| | |||| ||||  ||||||| |||||| |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||||    
T  18045077 atcacaagggaaccgaaaaccaagatttgctttatccggtatcaatcgtgagctacgagcaaatagaacttcttttaggagtatcaatacc 18045167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University