View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18971_low_5 (Length: 352)
Name: NF18971_low_5
Description: NF18971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18971_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 29259338 - 29259632
Alignment:
| Q |
1 |
aaatgtgggaacatcaaatagtagaagttggaaggtcagtactacagtagtacgagcatagcctaatatgtgtaaagtggtcccttccccaccccaaagc |
100 |
Q |
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| T |
29259338 |
aaatgtgggaacatcaaattgtagaagttggaaggtcattactacagta---cgagtatagcctaatatgtgtaaagtggtcccttccccaccccaaagc |
29259434 |
T |
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| Q |
101 |
caaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaagaaacgcatgcatatatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29259435 |
caaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaagaaacgcatgc--atatttc |
29259532 |
T |
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| Q |
201 |
gtatagaatgaacctttaaaaacagacggcagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgttttaagcaaaataatatttgc |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29259533 |
gtatagaatgaacctttaaaaacagacggtagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgttttaagcaaaataatatttgc |
29259632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 29261264 - 29261230
Alignment:
| Q |
163 |
caaaaggaagaagaacaagaaacgcatgcatatat |
197 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
29261264 |
caaaagaaagaagaacaagaaacgcatgcatatat |
29261230 |
T |
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