View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18971_low_6 (Length: 334)

Name: NF18971_low_6
Description: NF18971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18971_low_6
NF18971_low_6
[»] chr5 (4 HSPs)
chr5 (1-316)||(1580742-1581057)
chr5 (1-316)||(1603758-1604073)
chr5 (95-307)||(1587251-1587463)
chr5 (95-307)||(1590760-1590972)
[»] chr3 (1 HSPs)
chr3 (95-307)||(19270343-19270555)
[»] chr7 (1 HSPs)
chr7 (94-260)||(39616012-39616178)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 1581057 - 1580742
Alignment:
Q  1 atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581057 atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt 1580958  T
Q  101 taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1580957 taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgat 1580858  T
Q  201 cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  1580857 cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcact 1580758  T
Q  301 cttcttttcgccttat 316  Q
    ||||||||||||||||    
T  1580757 cttcttttcgccttat 1580742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 1603758 - 1604073
Alignment:
Q  1 atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1603758 atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt 1603857  T
Q  101 taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1603858 taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgat 1603957  T
Q  201 cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  1603958 cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcact 1604057  T
Q  301 cttcttttcgccttat 316  Q
    ||||||||||||||||    
T  1604058 cttcttttcgccttat 1604073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 95 - 307
Target Start/End: Complemental strand, 1587463 - 1587251
Alignment:
Q  95 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc 194  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||| | ||||| |||||    
T  1587463 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 1587364  T
Q  195 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt 294  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| ||       |||   |||||||||||| ||||||||    
T  1587363 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt 1587264  T
Q  295 ttcactcttcttt 307  Q
    || ||||||||||    
T  1587263 ttaactcttcttt 1587251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 307
Target Start/End: Original strand, 1590760 - 1590972
Alignment:
Q  95 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc 194  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||| ||  || ||||||  ||||||||||||| |||||||||| | ||||| |||||    
T  1590760 cttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 1590859  T
Q  195 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt 294  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| ||       |||   |||||||||||| ||||||||    
T  1590860 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt 1590959  T
Q  295 ttcactcttcttt 307  Q
    || || |||||||    
T  1590960 ttaacacttcttt 1590972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 95 - 307
Target Start/End: Original strand, 19270343 - 19270555
Alignment:
Q  95 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc 194  Q
    |||||||||  |||||||| |||||| ||||||  |   |||||| |||  |||||||||  |||| |||||||| |||||||||| | |||||||||||    
T  19270343 cttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactc 19270442  T
Q  195 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt 294  Q
    |||||||||| |||| |  | ||||||||||||||| ||||| |||||||| ||||||||||||||       |||  ||||||||||||||||||||||    
T  19270443 tttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggt 19270542  T
Q  295 ttcactcttcttt 307  Q
    |||||||||||||    
T  19270543 ttcactcttcttt 19270555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 39616012 - 39616178
Alignment:
Q  94 tcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaact 193  Q
    ||||||||||||| |||||||||||||||||||  || |  || ||||||  ||||||||| |||  ||||||||| | |||||||| | ||||||||||    
T  39616012 tcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaact 39616111  T
Q  194 ctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttg 260  Q
    | ||||||||| ||| ||||| |||||| ||||||||||||||| | | ||| |||| |||||||||    
T  39616112 ccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatcttg 39616178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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