View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18971_low_7 (Length: 279)
Name: NF18971_low_7
Description: NF18971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18971_low_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 3635822 - 3635552
Alignment:
| Q |
9 |
caagaatatattttgcaatttcaataagagaataaaatggcatatcaaatcaaaaggtagttgattaagatgtatttaagggttgatagagacttaagta |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635822 |
caagaaaatattttgcaatttcaataagagaataaaatggcatatcaaatcaaaaggtagttgattaagatgtatttaagggttgatagagacttaagta |
3635723 |
T |
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| Q |
109 |
tgattgtattttggacagaaatataaataatgaagtttcttgttactcaactacccaacctatattgtgatatccaatgtaaaaggatttatgatcatga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635722 |
tgattgtattttggacagaaatataaataatgaagttttttgttactcaactacccaacctatattgtgatatccaatgtaaaaggatttatgatcatga |
3635623 |
T |
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| Q |
209 |
catttgtggtccttaaataaaagctaggtagcatcttaggcttctaattaattaaccacaaattagttagt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635622 |
catttgtggtccttaaataaaagctaggtagcatcttaggcttctaattaattaaccacaaattagttagt |
3635552 |
T |
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