View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18972_high_2 (Length: 421)

Name: NF18972_high_2
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18972_high_2
NF18972_high_2
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-277)||(21102-21362)
[»] chr6 (3 HSPs)
chr6 (299-405)||(3808111-3808217)
chr6 (307-372)||(6864134-6864199)
chr6 (306-362)||(31971534-31971590)
[»] chr1 (3 HSPs)
chr1 (160-241)||(50872543-50872624)
chr1 (305-366)||(46334776-46334837)
chr1 (307-368)||(64679-64740)
[»] chr5 (11 HSPs)
chr5 (188-235)||(25080438-25080485)
chr5 (188-235)||(25138407-25138454)
chr5 (300-343)||(43359067-43359110)
chr5 (320-366)||(32020360-32020406)
chr5 (319-372)||(3671213-3671266)
chr5 (312-361)||(4432122-4432171)
chr5 (300-357)||(13409560-13409617)
chr5 (302-362)||(16440786-16440847)
chr5 (318-362)||(8545001-8545045)
chr5 (318-362)||(15725326-15725370)
chr5 (322-362)||(18147571-18147611)
[»] chr2 (5 HSPs)
chr2 (299-348)||(4138010-4138059)
chr2 (299-361)||(32986018-32986080)
chr2 (305-366)||(15541251-15541312)
chr2 (318-366)||(4693083-4693131)
chr2 (309-373)||(40799597-40799661)
[»] chr3 (8 HSPs)
chr3 (328-368)||(53221957-53221997)
chr3 (320-369)||(45096024-45096073)
chr3 (305-362)||(51250232-51250289)
chr3 (297-345)||(9598461-9598509)
chr3 (318-366)||(24145399-24145447)
chr3 (324-364)||(37376608-37376648)
chr3 (317-361)||(39869818-39869862)
chr3 (302-362)||(43334508-43334568)
[»] chr4 (5 HSPs)
chr4 (321-372)||(51298711-51298762)
chr4 (320-362)||(18635535-18635577)
chr4 (299-363)||(32338165-32338230)
chr4 (321-373)||(12439658-12439710)
chr4 (305-357)||(37921756-37921808)
[»] chr7 (3 HSPs)
chr7 (320-362)||(6384856-6384898)
chr7 (299-344)||(28736626-28736671)
chr7 (299-343)||(47663376-47663420)
[»] chr8 (3 HSPs)
chr8 (305-362)||(6314322-6314379)
chr8 (299-364)||(12938920-12938985)
chr8 (318-366)||(8837921-8837969)


Alignment Details
Target: scaffold0223 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 21362 - 21102
Alignment:
Q  1 gtttatgccattgaaactcttggtggtcatcaaagtatgtatatttctacattactttattagatgttattttcttgtttcatttatatatagtactatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  21362 gtttatgccattgaaactcttggtggtcatcaaagtatgtatatttctacattactttattagatgttattttcttgtttcatttatatatag------- 21270  T
Q  101 actatggttaatttttgatnnnnnnnnttgtcaaaatttatgtttcttttttcatttgtagaggctactcctaagcttgttcttcagttgatggatgtta 200  Q
             ||||||||||        |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  21269 ---------aatttttgataaaaaaaattgtcaaaatttatgtttcttttttcatttttagaggctactcctaaacttgttcttcagttgatggatgtta 21179  T
Q  201 aagggctaacaatttcacatgttaagagccatttgcaggttgatttttatatgctttcaaaattatattttagtcta 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21178 aagggctaacaatttcacatgttaagagccatttgcaggttgatttttatatgctttcaaaattatattttagtcta 21102  T

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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 405
Target Start/End: Original strand, 3808111 - 3808217
Alignment:
Q  299 gtggttggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaagttcatggagattatttatgaaaatctttgatacagt 398  Q
    |||| |||||||||||| |||||||||| |||||| || ||||||||||| ||||||||||||||||| || || || || ||||||||||||||| |||    
T  3808111 gtggctggggtttgaatctcggaccttgcatatattatgcattgtccttactaactgagttaagttcacggggactacttctgaaaatctttgatatagt 3808210  T
Q  399 attatat 405  Q
    |||||||    
T  3808211 attatat 3808217  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 6864134 - 6864199
Alignment:
Q  307 ggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaagttcatggaga 372  Q
    ||||||||| ||||| |||| |||||| || |||||||||| | |||||||||||| |||||||||    
T  6864134 ggtttgaatatcggatcttgcatatattatgcattgtccttttcaactgagttaagctcatggaga 6864199  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 31971590 - 31971534
Alignment:
Q  306 gggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    |||||||||  |||||||||| |||||| || |||||||||||  ||||||||||||    
T  31971590 gggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaag 31971534  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 50872624 - 50872543
Alignment:
Q  160 agaggctactcctaagcttgttcttcagttgatggatgttaaagggctaacaatttcacatgttaagagccatttgcaggtt 241  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||| || || ||||||||||| ||||||||| | ||||||    
T  50872624 agaggctactcctaaacttgttcttcagttgatggatatcaaaggactcactatttcacatgtcaagagccatcttcaggtt 50872543  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 46334837 - 46334776
Alignment:
Q  305 ggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaagttca 366  Q
    ||||||||||| || |||||||||||| | || |||||| ||||| ||||||||||||||||    
T  46334837 ggggtttgaatctcagaccttgtatattttatgcattgttcttatcaactgagttaagttca 46334776  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 64679 - 64740
Alignment:
Q  307 ggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaagttcatg 368  Q
    |||||||| | ||||| ||| |||||| || ||||||||||| ||| |||||||||||||||    
T  64679 ggtttgaactccggactttgcatatattatgcattgtccttactaattgagttaagttcatg 64740  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 25080485 - 25080438
Alignment:
Q  188 ttgatggatgttaaagggctaacaatttcacatgttaagagccatttg 235  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  25080485 ttgaaggatgttaaagggcaaacaatttcacatgtcaagagccatttg 25080438  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 25138454 - 25138407
Alignment:
Q  188 ttgatggatgttaaagggctaacaatttcacatgttaagagccatttg 235  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  25138454 ttgaaggatgttaaagggcaaacaatttcacatgtcaagagccatttg 25138407  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 43359067 - 43359110
Alignment:
Q  300 tggttggggtttgaatttcggaccttgtatatatcatacattgt 343  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||    
T  43359067 tggttggagtttgaatttcggatcttgtatatattatacattgt 43359110  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 32020360 - 32020406
Alignment:
Q  320 gaccttgtatatatcatacattgtccttattaactgagttaagttca 366  Q
    |||||||||||||||||||||||||| ||  ||||||| ||||||||    
T  32020360 gaccttgtatatatcatacattgtccataccaactgagctaagttca 32020406  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 3671266 - 3671213
Alignment:
Q  319 ggaccttgtatatatcatacattgtccttattaactgagttaagttcatggaga 372  Q
    |||||||| |||||| ||||||| ||||||| |||||||||||| ||| |||||    
T  3671266 ggaccttgcatatattatacattatccttatcaactgagttaagctcacggaga 3671213  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 4432171 - 4432122
Alignment:
Q  312 gaatttcggaccttgtatatatcatacattgtccttattaactgagttaa 361  Q
    ||||||||||||||  |||||| || |||||||||||| |||||||||||    
T  4432171 gaatttcggaccttacatatattatgcattgtccttatcaactgagttaa 4432122  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 13409617 - 13409560
Alignment:
Q  300 tggttggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgag 357  Q
    |||| |||||||||| | |||||||||||||||| || |||||| ||||| |||||||    
T  13409617 tggtcggggtttgaactccggaccttgtatatattatgcattgttcttatcaactgag 13409560  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 16440786 - 16440847
Alignment:
Q  302 gttggggtttgaatttcggaccttgtatatatcataca-ttgtccttattaactgagttaag 362  Q
    ||||||||||||| ||| ||||||| |||||||||| | |||||| || |||||||||||||    
T  16440786 gttggggtttgaacttctgaccttgaatatatcatatatttgtccatactaactgagttaag 16440847  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 8545001 - 8545045
Alignment:
Q  318 cggaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    ||||||||| |||||| || |||||||||||| ||||||||||||    
T  8545001 cggaccttgcatatattatgcattgtccttatcaactgagttaag 8545045  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 15725326 - 15725370
Alignment:
Q  318 cggaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    |||||||||||||||| ||||||||| | || |||||||||||||    
T  15725326 cggaccttgtatatattatacattgttcatactaactgagttaag 15725370  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 18147571 - 18147611
Alignment:
Q  322 ccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    ||||| |||||| ||||||||||||||| ||||||||||||    
T  18147571 ccttgcatatattatacattgtccttatcaactgagttaag 18147611  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 4138059 - 4138010
Alignment:
Q  299 gtggttggggtttgaatttcggaccttgtatatatcatacattgtcctta 348  Q
    ||||| ||||||||||| |||||||||| |||||| ||||||||||||||    
T  4138059 gtggtcggggtttgaatctcggaccttgcatatattatacattgtcctta 4138010  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 32986080 - 32986018
Alignment:
Q  299 gtggttggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaa 361  Q
    |||||||||||||||||| |||| ||||||||||| || |||| | | ||| |||||||||||    
T  32986080 gtggttggggtttgaattccggatcttgtatatattattcatttttcatatcaactgagttaa 32986018  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 15541251 - 15541312
Alignment:
Q  305 ggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaagttca 366  Q
    |||||||||||| ||||||||| |||||||||   |||||||||| || |||| ||||||||    
T  15541251 ggggtttgaattccggaccttgcatatatcatgtgttgtccttatcaattgagctaagttca 15541312  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 4693131 - 4693083
Alignment:
Q  318 cggaccttgtatatatcatacattgtccttattaactgagttaagttca 366  Q
    ||||||||| || ||| ||| ||||||||||| ||||||||||||||||    
T  4693131 cggaccttgcatgtattatatattgtccttatcaactgagttaagttca 4693083  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 40799597 - 40799661
Alignment:
Q  309 tttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaagttcatggagat 373  Q
    |||||| |||||| |||| |||||| || |||||||||||| ||| ||  |||||||||||||||    
T  40799597 tttgaacttcggaacttgcatatattatgcattgtccttatcaaccgaactaagttcatggagat 40799661  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 53221997 - 53221957
Alignment:
Q  328 atatatcatacattgtccttattaactgagttaagttcatg 368  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  53221997 atatattatacattgtccttatcaactgagttaagttcatg 53221957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 45096073 - 45096024
Alignment:
Q  320 gaccttgtatatatcatacattgtccttattaactgagttaagttcatgg 369  Q
    ||||||| |||||| || |||||||||||| ||||||| |||||||||||    
T  45096073 gaccttgcatatattatgcattgtccttatcaactgagctaagttcatgg 45096024  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 51250232 - 51250289
Alignment:
Q  305 ggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    |||||||||| ||| | ||||| |||||| ||||||||||||||  ||||||||||||    
T  51250232 ggggtttgaacttcaggccttgcatatattatacattgtccttaccaactgagttaag 51250289  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 9598509 - 9598461
Alignment:
Q  297 tagtggttggggtttgaatttcggaccttgtatatatcatacattgtcc 345  Q
    ||||||| ||||||||||| |||||||||| |||| | |||||||||||    
T  9598509 tagtggtcggggtttgaatctcggaccttgcatattttatacattgtcc 9598461  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 24145447 - 24145399
Alignment:
Q  318 cggaccttgtatatatcatacattgtccttattaactgagttaagttca 366  Q
    |||||||||||||||| || |||||||| ||  ||||||||||||||||    
T  24145447 cggaccttgtatatattatgcattgtccctaccaactgagttaagttca 24145399  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 37376608 - 37376648
Alignment:
Q  324 ttgtatatatcatacattgtccttattaactgagttaagtt 364  Q
    |||||||||| || ||||||||||| |||||||||||||||    
T  37376608 ttgtatatattatgcattgtccttactaactgagttaagtt 37376648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 39869818 - 39869862
Alignment:
Q  317 tcggaccttgtatatatcatacattgtccttattaactgagttaa 361  Q
    ||||||||||||||||| || |||||||||||  |||||||||||    
T  39869818 tcggaccttgtatatattatgcattgtccttaccaactgagttaa 39869862  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 43334508 - 43334568
Alignment:
Q  302 gttggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    |||||||||||||| || |||||||||||||| || ||| |||||||  | ||||||||||    
T  43334508 gttggggtttgaatctcagaccttgtatatattatgcatggtccttaccagctgagttaag 43334568  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 51298711 - 51298762
Alignment:
Q  321 accttgtatatatcatacattgtccttattaactgagttaagttcatggaga 372  Q
    |||||| |||||| ||| ||||||||||| |||||||||||||||| |||||    
T  51298711 accttgcatatattatatattgtccttatcaactgagttaagttcacggaga 51298762  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 18635577 - 18635535
Alignment:
Q  320 gaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    |||||||||||||| || |||||||||||| ||||||||||||    
T  18635577 gaccttgtatatattatgcattgtccttatcaactgagttaag 18635535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 32338230 - 32338165
Alignment:
Q  299 gtggttggggtttgaatttcggaccttgtatatatcat-acattgtccttattaactgagttaagt 363  Q
    |||||||||||||||| |||| |||||| |||||| || ||||||| |||| |||||||| |||||    
T  32338230 gtggttggggtttgaacttcgaaccttgcatatattataacattgttcttactaactgagctaagt 32338165  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 12439710 - 12439658
Alignment:
Q  321 accttgtatatatcatacattgtccttattaactgagttaagttcatggagat 373  Q
    |||||| |||||| || |||||||||||| ||||||| |||||||||| ||||    
T  12439710 accttgcatatattatgcattgtccttatcaactgagctaagttcatgaagat 12439658  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 37921808 - 37921756
Alignment:
Q  305 ggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgag 357  Q
    |||||||||||  ||||||||| |||||| || ||||||||||| ||||||||    
T  37921808 ggggtttgaatcccggaccttgcatatattatgcattgtccttactaactgag 37921756  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 6384898 - 6384856
Alignment:
Q  320 gaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    ||||||| |||||| || |||||||||||||||||||||||||    
T  6384898 gaccttgcatatattatgcattgtccttattaactgagttaag 6384856  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 28736626 - 28736671
Alignment:
Q  299 gtggttggggtttgaatttcggaccttgtatatatcatacattgtc 344  Q
    ||||||||||||||||  |||||||||| ||||||||| |||||||    
T  28736626 gtggttggggtttgaacctcggaccttgcatatatcatgcattgtc 28736671  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 47663376 - 47663420
Alignment:
Q  299 gtggttggggtttgaatttcggaccttgtatatatcatacattgt 343  Q
    ||||| |||||||||| ||| |||||||||||||| |||||||||    
T  47663376 gtggtcggggtttgaacttcagaccttgtatatattatacattgt 47663420  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 6314322 - 6314379
Alignment:
Q  305 ggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaag 362  Q
    |||||| ||||||||||||||| |||| | || |||||||||||| ||||||| ||||    
T  6314322 ggggttcgaatttcggaccttgcatattttatgcattgtccttatcaactgagctaag 6314379  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 12938920 - 12938985
Alignment:
Q  299 gtggttggggtttgaatttcggaccttgtatatatcatacattgtccttattaactgagttaagtt 364  Q
    ||||| ||||||| ||||||| ||||||||||||| || |||||||| ||| |  |||||||||||    
T  12938920 gtggtcggggtttaaatttcgaaccttgtatatattatgcattgtccctatcagttgagttaagtt 12938985  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 8837969 - 8837921
Alignment:
Q  318 cggaccttgtatatatcatacattgtccttattaactgagttaagttca 366  Q
    |||||||||||||||| || |||||||| ||| ||| ||||||||||||    
T  8837969 cggaccttgtatatattatgcattgtccctatcaaccgagttaagttca 8837921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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