View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18972_high_5 (Length: 250)
Name: NF18972_high_5
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18972_high_5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 47941083 - 47941280
Alignment:
| Q |
53 |
ttacttgtctcttctcacagtcatatttgcgctccccaatagcaggcatgaaactcatcattatggaaccgcgacgatcaaccacaagagccccagactg |
152 |
Q |
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| T |
47941083 |
ttacttgtctcttctcccagtcatatttgcgctcgccaatagcaggcatgaaactcatcattatggaaccgtgacgatcaaccacaagagccccagactg |
47941182 |
T |
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| Q |
153 |
taacaaatggaattgataaacatgaagttcagattagttagaccatgtttggataaacaacttatcatataagcgcttaagaataagctatttctata |
250 |
Q |
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| T |
47941183 |
taacaaatggaattgataaacatgaagttcagattagttagaccatgtttggataaacaacttatcatataagcgcttaagaataagctatttctata |
47941280 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 9093719 - 9093666
Alignment:
| Q |
198 |
tgtttggataaacaacttatcat-ataagcgcttaagaataagctatttctata |
250 |
Q |
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||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
9093719 |
tgtttggataaacaacttatcatgataagcgcttatggataagctatttctata |
9093666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 2767870 - 2767838
Alignment:
| Q |
185 |
attagttagaccatgtttggataaacaacttat |
217 |
Q |
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| T |
2767870 |
attacttagaccatgtttggataaacaacttat |
2767838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 247
Target Start/End: Complemental strand, 11155540 - 11155509
Alignment:
| Q |
216 |
atcatataagcgcttaagaataagctatttct |
247 |
Q |
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| T |
11155540 |
atcatataagcgcttaagaataagctatttct |
11155509 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 905115 - 905080
Alignment:
| Q |
215 |
tatcatataagcgcttaagaataagctatttctata |
250 |
Q |
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| T |
905115 |
tatcatataagcgcttaagtataagctatttctata |
905080 |
T |
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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 143208 - 143171
Alignment:
| Q |
213 |
cttatcatataagcgcttaagaataagctatttctata |
250 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |
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| T |
143208 |
cttatcatataagcgcttatgaattagctatttctata |
143171 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 43530257 - 43530221
Alignment:
| Q |
214 |
ttatcatataagcgcttaagaataagctatttctata |
250 |
Q |
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||||||||||||| |||| |||||||||||||||||| |
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| T |
43530257 |
ttatcatataagcacttatgaataagctatttctata |
43530221 |
T |
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