View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18972_high_7 (Length: 226)

Name: NF18972_high_7
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18972_high_7
NF18972_high_7
[»] chr5 (10 HSPs)
chr5 (7-226)||(7717619-7717838)
chr5 (95-130)||(26605401-26605436)
chr5 (95-136)||(7951771-7951812)
chr5 (95-136)||(8100179-8100220)
chr5 (95-136)||(14570676-14570717)
chr5 (95-136)||(17592587-17592628)
chr5 (95-136)||(25600845-25600886)
chr5 (96-136)||(11937204-11937244)
chr5 (92-136)||(15674986-15675030)
chr5 (95-135)||(33639502-33639542)
[»] chr8 (17 HSPs)
chr8 (96-136)||(45425243-45425283)
chr8 (95-136)||(4631339-4631380)
chr8 (95-136)||(21137066-21137107)
chr8 (94-135)||(31846281-31846322)
chr8 (92-136)||(13568692-13568736)
chr8 (95-130)||(2152026-2152061)
chr8 (92-126)||(37296208-37296242)
chr8 (95-136)||(11113992-11114033)
chr8 (95-136)||(12255305-12255346)
chr8 (95-136)||(12260848-12260889)
chr8 (95-136)||(28864293-28864334)
chr8 (95-136)||(36176888-36176929)
chr8 (95-136)||(36245698-36245739)
chr8 (95-136)||(39112547-39112588)
chr8 (95-136)||(44502833-44502874)
chr8 (92-136)||(8951210-8951254)
chr8 (96-136)||(25635934-25635974)
[»] scaffold0066 (1 HSPs)
scaffold0066 (95-136)||(34313-34354)
[»] chr4 (9 HSPs)
chr4 (95-136)||(2615729-2615770)
chr4 (92-129)||(3168218-3168255)
chr4 (95-130)||(4416181-4416216)
chr4 (95-130)||(6083500-6083535)
chr4 (95-130)||(39184487-39184522)
chr4 (92-130)||(53910349-53910387)
chr4 (95-136)||(9328025-9328066)
chr4 (95-136)||(33501714-33501755)
chr4 (96-136)||(4094759-4094799)
[»] chr2 (5 HSPs)
chr2 (93-130)||(7455848-7455885)
chr2 (95-136)||(16108261-16108302)
chr2 (95-136)||(16669837-16669878)
chr2 (95-136)||(23789179-23789220)
chr2 (92-136)||(15353246-15353290)
[»] chr7 (12 HSPs)
chr7 (92-136)||(47534686-47534730)
chr7 (95-130)||(9303866-9303901)
chr7 (96-135)||(10538917-10538956)
chr7 (95-136)||(17491726-17491767)
chr7 (95-136)||(17561447-17561488)
chr7 (95-136)||(20075057-20075098)
chr7 (95-136)||(21295361-21295402)
chr7 (95-136)||(34012304-34012345)
chr7 (95-136)||(41002940-41002981)
chr7 (95-136)||(44547637-44547678)
chr7 (95-135)||(10071852-10071892)
chr7 (96-136)||(49110813-49110853)
[»] chr3 (9 HSPs)
chr3 (96-136)||(1572540-1572580)
chr3 (96-130)||(41824324-41824358)
chr3 (95-136)||(1641885-1641926)
chr3 (95-136)||(25916613-25916654)
chr3 (95-136)||(39952481-39952522)
chr3 (95-136)||(44543992-44544033)
chr3 (95-136)||(54849574-54849615)
chr3 (95-131)||(7462886-7462922)
chr3 (96-136)||(20877841-20877881)
[»] chr1 (10 HSPs)
chr1 (92-136)||(13698821-13698865)
chr1 (92-136)||(47263668-47263712)
chr1 (95-136)||(15616346-15616387)
chr1 (95-136)||(18237302-18237343)
chr1 (95-136)||(31635916-31635957)
chr1 (95-136)||(37951735-37951776)
chr1 (96-136)||(10383828-10383868)
chr1 (92-136)||(11907010-11907054)
chr1 (96-136)||(31154469-31154509)
chr1 (96-136)||(32153580-32153620)
[»] chr6 (3 HSPs)
chr6 (95-137)||(15287347-15287389)
chr6 (95-136)||(345078-345119)
chr6 (95-136)||(12105849-12105890)
[»] scaffold0122 (1 HSPs)
scaffold0122 (95-136)||(12274-12315)
[»] scaffold0121 (1 HSPs)
scaffold0121 (95-136)||(24417-24458)
[»] scaffold0012 (1 HSPs)
scaffold0012 (95-136)||(47850-47891)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 7717838 - 7717619
Alignment:
Q  7 atatgtatctcattgttttgcaaatgggtctcataaatgatcctacaatttacttcctccgtccccgtgtataagaccattttaccgagaattaagaaag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  7717838 atatgtatctcattgttttgcaaatgggtctcataaatgatcctacaatttacttcctccatcccagtgtataataccattttaccgagaattaagaaag 7717739  T
Q  107 ttgatatttatattaaagttgtttataatcttaaaccggtcttataattaaggagggatgtaatacatgataaatcttataagagtccgaattaggaata 206  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||||||    
T  7717738 ttgatatttatattaaagttgtttgtaattttaaatcggtcttataattaaggaaggaggtaatacatgataaatcttataagaatccgtattaggaata 7717639  T
Q  207 aaataacaaattattagaaa 226  Q
    ||||||||||||||||||||    
T  7717638 aaataacaaattattagaaa 7717619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 26605401 - 26605436
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26605401 gaattaagaaagtggatatttatattaaagttgttt 26605436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 7951812 - 7951771
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  7951812 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 7951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 8100179 - 8100220
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||||||||||| ||||||| |||||| |||||    
T  8100179 gaattaagaaagttgatatttgtattaaatttgtttgtaatc 8100220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 14570676 - 14570717
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  14570676 gaattaagaaggtggatatttgtattaaagttgtttataatc 14570717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 17592587 - 17592628
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  17592587 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 17592628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 25600845 - 25600886
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  25600845 gaattaagatagtggatatttatattaaagttgtttgtaatc 25600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 11937204 - 11937244
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||||||||||| ||||||| || |||||||||    
T  11937204 aattaagaaagttgatatttgtattaaatttatttataatc 11937244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 15675030 - 15674986
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||||||  |||||| |||||||||||||| |||||    
T  15675030 cgagaattaagaaagtgaatatttgtattaaagttgtttgtaatc 15674986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 33639542 - 33639502
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataat 135  Q
    ||||||| ||||| |||||||||||||||||||||| ||||    
T  33639542 gaattaaaaaagtggatatttatattaaagttgtttgtaat 33639502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 45425283 - 45425243
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  45425283 aattaagaaagttgatatttatattaaagttgtttgtaatc 45425243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 4631339 - 4631380
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  4631339 gaattaagaaagtggatatttatattaaagttgtttgtaatc 4631380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 21137107 - 21137066
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  21137107 gaattaagaaagttgatatttgtattaaagttgtttgtaatc 21137066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 31846281 - 31846322
Alignment:
Q  94 agaattaagaaagttgatatttatattaaagttgtttataat 135  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  31846281 agaatttagaaagttgatatttatattaaagttgtttgtaat 31846322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 13568692 - 13568736
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||||||  |||||||||||||||||||||| |||||    
T  13568692 cgagaattaagaaagcagatatttatattaaagttgtttgtaatc 13568736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 2152026 - 2152061
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2152026 gaattaagaaagtggatatttatattaaagttgttt 2152061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 37296242 - 37296208
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagtt 126  Q
    |||||||||||||||||||||||| ||||||||||    
T  37296242 cgagaattaagaaagttgatatttgtattaaagtt 37296208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 11114033 - 11113992
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||| |||||| ||||||||||||||||||||| |||||    
T  11114033 gaattaaaaaagttcatatttatattaaagttgtttgtaatc 11113992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 12255346 - 12255305
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  12255346 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 12255305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 12260889 - 12260848
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  12260889 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 12260848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 28864293 - 28864334
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  28864293 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 28864334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 36176888 - 36176929
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||    
T  36176888 gaattaagatagtggatatttgtattaaagttgtttataatc 36176929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 36245698 - 36245739
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  36245698 gaattaagaaagtggatatttgtattaaagttgtttctaatc 36245739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 39112547 - 39112588
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||| |||||||||||||||| |||||||||||||| |||||    
T  39112547 gaatgaagaaagttgatatttgtattaaagttgtttgtaatc 39112588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 44502874 - 44502833
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  44502874 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 44502833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 8951210 - 8951254
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||| ||| ||||||| |||||||||||||| |||||    
T  8951210 cgagaattaagatagtggatatttgtattaaagttgtttgtaatc 8951254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 25635934 - 25635974
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  25635934 aattaagaaagtggatatttgtattaaagttgtttgtaatc 25635974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 34354 - 34313
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  34354 gaattaagaaagtggatatttatattaaagttgtttgtaatc 34313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 2615729 - 2615770
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  2615729 gaattaagaaagttgatatttgtattaaagttgtttgtaatc 2615770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 3168218 - 3168255
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtt 129  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3168218 cgagaattaagaaagttgatatttatattaaaattgtt 3168255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 4416216 - 4416181
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4416216 gaattaagaaagtggatatttatattaaagttgttt 4416181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 6083535 - 6083500
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6083535 gaattaagaaagtggatatttatattaaagttgttt 6083500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 39184522 - 39184487
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39184522 gaattaagaaagtggatatttatattaaagttgttt 39184487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 53910387 - 53910349
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  53910387 cgagaattaagaaagttgatatttgcattaaagttgttt 53910349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 9328025 - 9328066
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||||||||||| |||||||||||||| |||||    
T  9328025 gaattaagatagttgatatttgtattaaagttgtttgtaatc 9328066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 33501714 - 33501755
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||||||||||| |||||||||||||| |||||    
T  33501714 gaattaagatagttgatatttgtattaaagttgtttgtaatc 33501755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 4094759 - 4094799
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  4094759 aattaagaaagtggatatttgtattaaagttgtttgtaatc 4094799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 7455848 - 7455885
Alignment:
Q  93 gagaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7455848 gagaattaagaaaattgatatttatattaaagttgttt 7455885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 16108261 - 16108302
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  16108261 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 16108302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 16669878 - 16669837
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||||||||||| |||||||||||||| |||||    
T  16669878 gaattaagatagttgatatttgtattaaagttgtttgtaatc 16669837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 23789220 - 23789179
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  23789220 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 23789179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 15353246 - 15353290
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||||||  |||||| |||||||||||||| |||||    
T  15353246 cgagaattaagaaagtgaatatttgtattaaagttgtttgtaatc 15353290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 47534686 - 47534730
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||    
T  47534686 cgagaattaagaaagtggatatttgtattaaagttgtttgtaatc 47534730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 9303901 - 9303866
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgttt 130  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9303901 gaattaagaaagtggatatttatattaaagttgttt 9303866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 10538917 - 10538956
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataat 135  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  10538917 aattaagaaagttgatatttgtattaaagttgtttgtaat 10538956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 17491767 - 17491726
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||    
T  17491767 gaattaagatagtggatatttgtattaaagttgtttataatc 17491726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 17561447 - 17561488
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||    
T  17561447 gaattaagatagtggatatttgtattaaagttgtttataatc 17561488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 20075098 - 20075057
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  20075098 gaattaagaaagtgaatatttatattaaagttgtttgtaatc 20075057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 21295402 - 21295361
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  21295402 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 21295361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 34012304 - 34012345
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  34012304 gaattaagaaagtagatatttgtattaaagttgtttgtaatc 34012345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 41002940 - 41002981
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  41002940 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 41002981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 44547678 - 44547637
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  44547678 gaattaagatagtggatatttatattaaagttgtttgtaatc 44547637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 10071852 - 10071892
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataat 135  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  10071852 gaattaagaaaattgatatttgtattaaagttgtttgtaat 10071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 49110813 - 49110853
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||| ||||||||| |||||||||||||| |||||    
T  49110813 aattaagaaaattgatatttgtattaaagttgtttgtaatc 49110853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 1572580 - 1572540
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  1572580 aattaagaaaattgatatttatattaaagttgtttgtaatc 1572540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 41824358 - 41824324
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgttt 130  Q
    |||||||||||| ||||||||||||||||||||||    
T  41824358 aattaagaaagtggatatttatattaaagttgttt 41824324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 1641885 - 1641926
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  1641885 gaattaagatagtagatatttatattaaagttgtttgtaatc 1641926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 25916654 - 25916613
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  25916654 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 25916613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 39952522 - 39952481
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  39952522 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 39952481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 44544033 - 44543992
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  44544033 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 44543992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 54849615 - 54849574
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| |||||||| ||||||||||||| |||||    
T  54849615 gaattaagaaagtggatatttacattaaagttgtttgtaatc 54849574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 7462886 - 7462922
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgttta 131  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  7462886 gaattaagaaagtggatatttgtattaaagttgttta 7462922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 20877881 - 20877841
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  20877881 aattaagaaagtggatatttgtattaaagttgtttgtaatc 20877841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 13698865 - 13698821
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||    
T  13698865 cgagaattaagaaagtggatatttgtattaaagttgtttgtaatc 13698821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 47263712 - 47263668
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||    
T  47263712 cgagaattaagaaagtggatatttgtattaaagttgtttgtaatc 47263668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 15616387 - 15616346
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| |||| ||||||||||||||||| |||||    
T  15616387 gaattaagaaagtggataattatattaaagttgtttgtaatc 15616346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 18237343 - 18237302
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  18237343 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 18237302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 31635916 - 31635957
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||||  |||||| ||||||||||||||||||||    
T  31635916 gaattaagaaagtgaatatttgtattaaagttgtttataatc 31635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 37951735 - 37951776
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  37951735 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 37951776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 10383828 - 10383868
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||| ||||||||||||||| |||||| |||||    
T  10383828 aattaagaaagtggatatttatattaaatttgtttgtaatc 10383868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 11907010 - 11907054
Alignment:
Q  92 cgagaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||| ||| ||||||| |||||||||||||| |||||    
T  11907010 cgagaattaagatagtagatatttgtattaaagttgtttgtaatc 11907054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 31154509 - 31154469
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||| | |||||||||||||||||||||| |||||    
T  31154509 aattaagaaaatggatatttatattaaagttgtttttaatc 31154469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 32153580 - 32153620
Alignment:
Q  96 aattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    |||||||||||| | |||||||||||||||||||| |||||    
T  32153580 aattaagaaagtaggtatttatattaaagttgtttgtaatc 32153620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 15287389 - 15287347
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatct 137  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  15287389 gaattaagaaagtggatatttgtattaaagttgtttgtaatct 15287347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 345119 - 345078
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  345119 gaattaagaaagcagatatttatattaaagttgtttgtaatc 345078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 12105849 - 12105890
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  12105849 gaattaagatagtggatatttatattaaagttgtttgtaatc 12105890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 12315 - 12274
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  12315 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 12274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 24417 - 24458
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  24417 gaattaagatagtggatatttatattaaagttgtttgtaatc 24458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 47891 - 47850
Alignment:
Q  95 gaattaagaaagttgatatttatattaaagttgtttataatc 136  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  47891 gaattaagaaagtggatatttgtattaaagttgtttgtaatc 47850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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