View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18972_low_1 (Length: 473)
Name: NF18972_low_1
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18972_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 54 - 467
Target Start/End: Original strand, 4411655 - 4412068
Alignment:
| Q |
54 |
aagttttgttcgagaatgctgatagtagtttttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt |
153 |
Q |
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| T |
4411655 |
aagttttgttcgagaatgctgatagtagtctttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt |
4411754 |
T |
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| Q |
154 |
tcatgctgctactgagctcgatccacaaatacatgcgcactttgctgtcaaaacggtttctcaactatataaggacttgagagagaggattagcaaacat |
253 |
Q |
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| T |
4411755 |
tcatgctgctactgagctcgatccacaaatacacgcgcactttgctgtcaaaacggtttctcgactatataaggacttgagagagaggattagcaaacat |
4411854 |
T |
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| Q |
254 |
attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaac |
353 |
Q |
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| T |
4411855 |
attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaac |
4411954 |
T |
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| Q |
354 |
agttgaaaaggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatcc |
453 |
Q |
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| T |
4411955 |
agttgaaaaggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatcc |
4412054 |
T |
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| Q |
454 |
gtaagtattatcta |
467 |
Q |
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| T |
4412055 |
gtaagtattatcta |
4412068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 4411378 - 4411425
Alignment:
| Q |
15 |
aattacatgcaacaccctcttaggaagaaaatcaaaattaagttttgt |
62 |
Q |
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| T |
4411378 |
aattacatgcaacaccctcttaggcagaaaatcaaaattaatttttgt |
4411425 |
T |
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