View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18972_low_10 (Length: 226)
Name: NF18972_low_10
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18972_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 27694440 - 27694265
Alignment:
| Q |
34 |
cgctgaaactctgtattaatatcaaaatcaatgttgaagaaaaatatttctccaatgactttgaaccgaaaaatatttgttgccagctaacttgttgttt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27694440 |
cgctgaaactctgtattaatatcaaaatcaatgttgaagaaaaatatttctccaatgactttgaaccgaaaaatatttgttgccagctaacttgttgttt |
27694341 |
T |
|
| Q |
134 |
cctgcagattagaaggccaaacatggattggttcaaggcaatgttgtgtgatgaaataggatcgaagcctttccct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27694340 |
cctgcagattagaaggccaaacatggattggttcaaggcaatgttgtgtgatgaaatagggtcgaagcctttccct |
27694265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University