View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18972_low_3 (Length: 361)
Name: NF18972_low_3
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18972_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 41929049 - 41928693
Alignment:
| Q |
1 |
ctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtgg---------tggaggtgg |
91 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41929049 |
ctaaaattgcacccatttctgttgggtcggtaagcacggaatttggatccaatggaaaattatgagcttgaaaatcctgtggcggcggtggtggaggtgg |
41928950 |
T |
|
| Q |
92 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcata |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41928949 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatattgagcatagtcatcaaagcccaatttttgcata |
41928850 |
T |
|
| Q |
192 |
gtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatggttagcctcagcggtaacaaagctaatgaattcagctgcatatt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41928849 |
gtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatggttagcctcagcggtaacaaagctaataaattcagctgcatatt |
41928750 |
T |
|
| Q |
292 |
tcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttttt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41928749 |
tcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttttt |
41928693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41938279 - 41938037
Alignment:
| Q |
1 |
ctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtgg---------tggaggtgg |
91 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41938279 |
ctaaaattgcacccatttctgttgggtcggcaaacatgaaattcggatccaatggaaaattatgagcttgaaaatcctgtggcggcggtggtggaggtgg |
41938180 |
T |
|
| Q |
92 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcata |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41938179 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaataccgagcatagtcatcaaagcccaatttttgcata |
41938080 |
T |
|
| Q |
192 |
gtagctaacaaatcttcagcagtaattgttgttctacaatcta |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41938079 |
gtagctaacaaatcttcagcagtaattgttgttctacaatcta |
41938037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 41911303 - 41910977
Alignment:
| Q |
1 |
ctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtggtgga---ggtggaggtgg |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
41911303 |
ctaaaattgcacccatttctgttgggtcggcaagcacgaaatttggatccaatggaaaattatgagcctgaaaatcctgtggcggcagtggtggaggtgg |
41911204 |
T |
|
| Q |
98 |
gggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcatagtagct |
197 |
Q |
| |
|
|||||| ||||||| ||| ||||||| ||| | |||||||||||||||||||| |||| || ||||||| ||||||| ||||||||||||||| || | |
|
|
| T |
41911203 |
gggagcgtattgacttacgcgagcacgatggcaaaaaagttggatgtagcggagggaacacgcagcatagacatcaaaacccaatttttgcatactaatt |
41911104 |
T |
|
| Q |
198 |
aacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatgg--ttagcctcagcggtaacaaagctaatgaattcagctgcatatttcac |
295 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |||||||||||| || | |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
41911103 |
aacaaatcttcagcagtaattgttgtcctataatctaaattgcaataatggttttggtctcagcagtaacaaagctaatgaattcagctg----gttcac |
41911008 |
T |
|
| Q |
296 |
cataatttccttgctttcatcggttatcttt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41911007 |
cataatttccttgctttcatcggttatcttt |
41910977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University