View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18972_low_4 (Length: 340)
Name: NF18972_low_4
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18972_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 35172372 - 35172055
Alignment:
| Q |
20 |
gtgtcgcgggtgtatataaaaggggtgtccatgaaacatatttctatataaaccactaagctgcttgtatttcaaagccaaaccaatcattcttgtttag |
119 |
Q |
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| T |
35172372 |
gtgtcgcgtgtgtatgtaaaaggggtgtccatgaaacatatttctatataaaccactaagctgcttgtatttcaaagccaaaccaatcattcttgtttag |
35172273 |
T |
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| Q |
120 |
ctgcataatggagcctaactttaatgtttcgcttccattagtgttcctaattatcactcctttacttttactccctctccatgccaaagatgaaacttcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35172272 |
ctgcataatggagcctaactttaatgtttcgcttccattagtgttcctaattatcactccttttcttttactccctctccatgccaaagatgaaacttcc |
35172173 |
T |
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| Q |
220 |
tccacctacatagtccacatggacaaatctctcatgcctcaagttttcacaagccatcataattggtatgaatccacccttcattccacaacaacacaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172172 |
tccacctacatagtccacatggacaaatctctcatgcctcaagttttcacaagccatcataattggtatgaatccacccttcattccacaacaacacaaa |
35172073 |
T |
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| Q |
320 |
gtgatgatgatgtccatc |
337 |
Q |
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|||||||| |||| |||| |
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| T |
35172072 |
gtgatgatcatgttcatc |
35172055 |
T |
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