View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18972_low_6 (Length: 258)
Name: NF18972_low_6
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18972_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 26452271 - 26452029
Alignment:
| Q |
1 |
aaaattggcaggttttttacaagaacttttcttagatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataag |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452271 |
aaaattggcaggttttttacaagtacttttcttagatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataag |
26452172 |
T |
|
| Q |
101 |
atttgcttcagacagtgacttacaaagcttgatataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452171 |
atttgcttcagacagtgacttacaaagcttgatataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatcc |
26452072 |
T |
|
| Q |
201 |
aaatactcaggatagaatcccaattcaagcattttcatcacag |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26452071 |
aaatactcaggatagaatcccaattcaagcattttcattacag |
26452029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University