View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18972_low_9 (Length: 249)
Name: NF18972_low_9
Description: NF18972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18972_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7717455 - 7717208
Alignment:
| Q |
1 |
aatgaatgattctatatgaagagatgtacacatatacaaatttataaatat--------aaattgatgataatgaaactcacttgatagcgagatttaac |
92 |
Q |
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| T |
7717455 |
aatgaatgattctatatgaagagatgtacacatatacaaacttataaatatttaaatataaattgatgataatgaaactcacttgatagcgagatttaac |
7717356 |
T |
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| Q |
93 |
ttatttttacgtatatctctctttaaattaaattcttttataagaaatcaaagtttgtttgtttaatttatttagtttaaatcataatatccatttgatt |
192 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7717355 |
ttatttttacatatatctctctttaaattaaattcttttataagaaatcaaagtttgtttgtttaatttatttagtttaaatcataatatccatttgatt |
7717256 |
T |
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| Q |
193 |
aaatctctttaaatactcaatcaaaaataattttaagttctccctatg |
240 |
Q |
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| T |
7717255 |
aaatctctttaaatattcaatcaaaaatgattttaagttctccctatg |
7717208 |
T |
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