View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18973_high_7 (Length: 222)
Name: NF18973_high_7
Description: NF18973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18973_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 2342759 - 2342946
Alignment:
| Q |
20 |
atattcattctcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgc |
119 |
Q |
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| T |
2342759 |
atattcattctcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgc |
2342858 |
T |
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| Q |
120 |
acttttctttctggatcaagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagcctgatcttcttct |
207 |
Q |
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| T |
2342859 |
acttttctttctggatcaagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagtctgatcttcttct |
2342946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 3353669 - 3353859
Alignment:
| Q |
20 |
atattcattctcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgc |
119 |
Q |
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|||||| |||||||||||||| ||||| || |||||||||||||| || ||||||||||| | ||||||||| || ||||| ||||| ||||| | |||| |
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| T |
3353669 |
atattctttctcaagttgcttagttttccaccttgctcttctattttggaaccatatagctacttgtctaggttgtaaccccaaagctttagccaattgc |
3353768 |
T |
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| Q |
120 |
acttttctttctggatcaagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagcctgatcttcttctcac |
210 |
Q |
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| T |
3353769 |
attttcctctcaggttcaagcttgtttccaatctcaaaactcttctcaagtgctttcacttgttctaaactcaacctcttcttcttttcac |
3353859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 17181898 - 17182070
Alignment:
| Q |
36 |
tgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggat |
135 |
Q |
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|||||||| || |||||||| |||||||| |||||||||||||||| ||||||||| ||||| | ||| | ||||| |||| ||| || || || | |
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| T |
17181898 |
tgctttgtcttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcattttcctctcaggct |
17181997 |
T |
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| Q |
136 |
caagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagcctgatcttcttctc |
208 |
Q |
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| T |
17181998 |
caagcttattaccaagttcaaaactcttctcaagtgtcttcacttgttccatattaagcctcctcttcttctc |
17182070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 42087487 - 42087545
Alignment:
| Q |
39 |
tttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
97 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
42087487 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaa |
42087545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 9379127 - 9379060
Alignment:
| Q |
30 |
tcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
97 |
Q |
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||||||||||||| ||| ||||| |||||| | || |||||||||||||||| |||||| |||||||| |
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| T |
9379127 |
tcaagttgctttgatttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaa |
9379060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 24692391 - 24692542
Alignment:
| Q |
57 |
cttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggatcaagcttgttcccaaattcaa |
156 |
Q |
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||||| || ||||||||||||||||||||||| |||||||| || | ||| | || || |||| ||| || || || ||||||||||| || || |||| |
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| T |
24692391 |
cttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaa |
24692490 |
T |
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| Q |
157 |
agctcttctcaagggcctgcacttgatccaaattcagcctgatcttcttctc |
208 |
Q |
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| T |
24692491 |
aactcttctcaagtgtcttcacttgttccatgttaagccttctcttcttctc |
24692542 |
T |
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